PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100278270001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

ZF-HD

Protein Properties

Length: 69aa MW: 7803.97 Da PI: 9.1339

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100278270001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.2	4.6e-29	15	67	3	56
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y+eC+kNhAas+G +avDGC+Efmp+ ge+g+ aa++CaAC+CHRnFH++ Ote100278270001\|100278270001 15 LVTYEECRKNHAASIGKYAVDGCCEFMPA-GEKGSGAAFRCAACNCHRNFHKKV 67 589***********************9.999*****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	1.9E-27	16	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-15	16	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.5E-25	17	66	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.396	18	67	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
MTQHKERKID SKERLVTYEE CRKNHAASIG KYAVDGCCEF MPAGEKGSGA AFRCAACNCH 60 RNFHKKVVR

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246148.1	5e-25	PREDICTED: mini zinc finger protein 2-like
Refseq	XP_010653170.1	2e-24	PREDICTED: mini zinc finger protein 2-like
Swissprot	Q9SB61	1e-19	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A2G9HH18	4e-35	A0A2G9HH18_9LAMI; Uncharacterized protein
STRING	Migut.L01769.1.p	1e-33	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]