PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100278360041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 512aa MW: 58654.4 Da PI: 9.6778

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100278360041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.7	2e-08	60	109	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 + h e+E++RR+++ + L +llP+ + ++Kls + Av++Ik+ Ote100278360041\|100278360041 60 KIIHREVEKKRRQEMSALCASLGSLLPPtQ---IKGKLSVCDQIHVAVDHIKE 109 5569**********************66...****************96 PP
2	HLH	35.5	1.8e-11	274	326	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ LrellP +++ s ++ +A++YIk+++ Ote100278360041\|100278360041 274 KKIMHRDIERQRRQEMSTLYASLRELLPLeY---IKGRRSISDHMHEATNYIKHME 326 5789***********************77...9*****************85 PP
3	HLH	24	6.8e-08	475	503	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 2 rrahnerErrRRdriNsafeeLrellPka 30 + h e+Er+RR+++ + ++ Lr++lP+ Ote100278360041\|100278360041 475 KLQHREIERQRRKEMADLYASLRSVLPSK 503 678************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.522	58	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.29E-5	59	115	No hit	No description
SuperFamily	SSF47459	1.03E-10	59	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	61	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.6E-9	61	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.11	64	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-13	271	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-7	271	330	No hit	No description
PROSITE profile	PS50888	13.554	273	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-8	275	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.1E-9	275	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0047	279	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.51E-6	473	504	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.94E-4	473	508	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-5	473	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.331	473	512	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-5	475	503	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MITFQQNNDE LVFGCPTTYM DSTLISFAAG DDGSNLVETT SFEPSLRRRI GRKSESSVKK 60 IIHREVEKKR RQEMSALCAS LGSLLPPTQI KGKLSVCDQI HVAVDHIKET EKKIERLRIR 120 RDKLKKSLGL SNPKPSSSSA ADHDCVTVNL GAEWVEILIS TPALRLSRLL SVLAQRELDV 180 VSCVSTRING RFFHKIKIEA LYMTSLDASE LQDRLRAAIK DYDLLFHEPP VIAEKDLSLN 240 HAFLDSPKLA IKISMKRKRA SKLDKKENNF DDDKKIMHRD IERQRRQEMS TLYASLRELL 300 PLEYIKGRRS ISDHMHEATN YIKHMEKNIK DLNQKKEKLK NVWNSSGSEN GSSNGVNLPN 360 FVTVNWGFDG AEILLNCGYG FSLSRILVEL IHTGLDVVSC ISNKVNGRFL YKIQTEVMNS 420 XXXXXXXXXX XXXKLLICCY IIFADNNLPK VEGEINFGRN EPNNLQKVDE EMEKKLQHRE 480 IERQRRKEMA DLYASLRSVL PSKSIKVKKY IY

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MITFQQNNDE LVFGCPTTYM DSTLISFAAG DDGSNLVETT SFEPSLRRRI GRKSESSVKK  60
IIHREVEKKR RQEMSALCAS LGSLLPPTQI KGKLSVCDQI HVAVDHIKET EKKIERLRIR  120
RDKLKKSLGL SNPKPSSSSA ADHDCVTVNL GAEWVEILIS TPALRLSRLL SVLAQRELDV  180
VSCVSTRING RFFHKIKIEA LYMTSLDASE LQDRLRAAIK DYDLLFHEPP VIAEKDLSLN  240
HAFLDSPKLA IKISMKRKRA SKLDKKENNF DDDKKIMHRD IERQRRQEMS TLYASLRELL  300
PLEYIKGRRS ISDHMHEATN YIKHMEKNIK DLNQKKEKLK NVWNSSGSEN GSSNGVNLPN  360
FVTVNWGFDG AEILLNCGYG FSLSRILVEL IHTGLDVVSC ISNKVNGRFL YKIQTEVMNS  420
XXXXXXXXXX XXXKLLICCY IIFADNNLPK VEGEINFGRN EPNNLQKVDE EMEKKLQHRE  480
IERQRRKEMA DLYASLRSVL PSKSIKVKKY IY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109