PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100278550011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 228aa MW: 25674 Da PI: 9.308

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100278550011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	6e-10	20	66	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+eE +++ a + + + +W ++a++++ g++ +++++ ++ + Ote100278550011\|100278550011 20 AWTKEENKRFESALAIFDEKtpnRWFKVAEMIP-GKSVYDVINQYREL 66 7****************9*********.********9975 PP
2	Myb_DNA-binding	21.8	4.4e-07	100	137	10	47
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++ + +++G+g+W+ I+r + +t+ q+ s+ qky Ote100278550011\|100278550011 100 VRFLLGLEKHGKGDWRNISRNFVISKTPTQVASHAQKY 137 589999***************789*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.655	13	67	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.4E-4	14	67	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-9	17	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-12	19	73	IPR009057	Homeodomain-like
CDD	cd00167	8.17E-9	20	67	No hit	No description
Pfam	PF00249	5.8E-8	20	66	IPR001005	SANT/Myb domain
SMART	SM00717	1.3	94	140	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.79E-9	99	141	IPR009057	Homeodomain-like
CDD	cd00167	6.73E-5	99	137	No hit	No description
PROSITE profile	PS50090	4.391	99	138	IPR017877	Myb-like domain
TIGRFAMs	TIGR01557	1.4E-10	100	141	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-5	100	137	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.1E-5	101	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
METLCPSSSW VRIQQKNNTA WTKEENKRFE SALAIFDEKT PNRWFKVAEM IPGKSVYDVI 60 NQYRELVADV SDIEAGLVPI PGYLASSFTL ELPDHRSFDV RFLLGLEKHG KGDWRNISRN 120 FVISKTPTQV ASHAQKYYLR QLSGGKDKRR PSIHDITTVH LSHQPHKSGG ADQITNPTTT 180 PKIVLDDLML FDSLAHHSNT GHCSAIFNIN NAAASTAGFY LKSPRFYG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	7e-14	21	96	11	86	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076737.1	1e-103	transcription factor DIVARICATA-like
Refseq	XP_011076738.1	1e-103	transcription factor DIVARICATA-like
Swissprot	Q8S9H7	8e-66	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A4D8ZZE5	1e-102	A0A4D8ZZE5_SALSN; Uncharacterized protein
STRING	Migut.F00707.1.p	6e-84	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]