PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote236030280001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

GRAS

Protein Properties

Length: 229aa MW: 25755.5 Da PI: 10.2133

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote236030280001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	179.6	2.3e-55	40	228	2	192
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 +lL++cAeavs + ++ ++lL+++++++sp+gd+++Rla++f++AL+ar+a+++ ly a ++++ + e l++++ Ote236030280001\|236030280001 40 HSLLTRCAEAVSCFNIAAGENLLKQIRKHSSPYGDANERLAHCFANALEARMAGTGAALYTASAARRIP---AGELLKSYQ 117 689*************************************************999999888888887...99*** PP GRAS 83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet 161 ++ +P+ ++s++ aN+ I + +++++++HiiDf+i +G+QWp++++ L+ +p+gpp+l+iTg++ p++g +e++e+t Ote236030280001\|236030280001 118 SYVTSCPFKRMSNIFANKSIARNAKESTKIHIIDFGILYGFQWPCIIHGLSLKPGGPPTLKITGIDYPQPGfkPAERVEQT 198 ******************************************************************999**** PP GRAS 162 gerLakfAeelgvpfefnvlvakrledlele 192 g+rLa+f+++++v+fe+n+ +ak++ed++le Ote236030280001\|236030280001 199 GRRLADFCKRFNVTFEYNA-IAKKWEDIRLE 228 ***************.7****9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.473	13	229	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.1E-53	40	228	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
STTDSEEERK KQYRKTKEVK RGRPKGSKKN RKVNEVVDLH SLLTRCAEAV SCFNIAAGEN 60 LLKQIRKHSS PYGDANERLA HCFANALEAR MAGTGAALYT ASAARRIPAG ELLKSYQSYV 120 TSCPFKRMSN IFANKSIARN AKESTKIHII DFGILYGFQW PCIIHGLSLK PGGPPTLKIT 180 GIDYPQPGFK PAERVEQTGR RLADFCKRFN VTFEYNAIAK KWEDIRLED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-32	45	221	25	198	Protein SCARECROW
5b3h_A	2e-32	45	221	24	197	Protein SCARECROW
5b3h_D	2e-32	45	221	24	197	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827860.1	1e-134	PREDICTED: scarecrow-like protein 11
Swissprot	Q9XE58	8e-76	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A022PXQ1	1e-133	A0A022PXQ1_ERYGU; Uncharacterized protein
TrEMBL	A0A4D9BWE3	1e-134	A0A4D9BWE3_SALSN; Uncharacterized protein
STRING	Migut.D02077.1.p	1e-134	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]