PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote236031580021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family B3
Protein Properties Length: 112aa    MW: 12688.3 Da    PI: 9.9714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote236031580021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.82.8e-1114061100
                                   E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                            B3  61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                                   ltkGW++Fvk+++L++gD+v+F ++ ++ ++l+++++r+s
  Ote236031580021|236031580021   1 LTKGWSRFVKEKRLDAGDIVLFARHPKEVGRLFIGWRRRS 40 
                                   79*********************887799********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.0E-8140IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-9141IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.856140IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-7139IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
LTKGWSRFVK EKRLDAGDIV LFARHPKEVG RLFIGWRRRS AGVGQPPCGG GWSAVVYPGH  60
PCPTHQQLSS NSIMHSMESS HAEEHRRGRN GNWKRLRLFG VNLELEEDES DV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077827.11e-27B3 domain-containing protein At2g36080 isoform X1
RefseqXP_022872332.16e-28B3 domain-containing protein At2g36080-like
TrEMBLA0A4D9AAQ11e-29A0A4D9AAQ1_SALSN; Uncharacterized protein
STRINGVIT_08s0007g02810.t019e-23(Vitis vinifera)