PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237241650001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 104aa MW: 11831.2 Da PI: 8.2167

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237241650001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.2	3.8e-45	11	103	1	93
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrrkC ++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l++++reda++sl+yeA++r+rdPvyG+vgvi+ Ote237241650001\|237241650001 11 PCAACKFLRRKCLPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPHQREDAVNSLAYEADMRLRDPVYGCVGVIS 91 7****************************************************************************** PP DUF260 82 klqqqleqlkae 93 lq+ql+ql+ + Ote237241650001\|237241650001 92 LLQHQLRQLQMD 103 *******987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.625	10	104	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-44	11	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 104 aa Download sequence Send to blast
MAXXXXXXTS PCAACKFLRR KCLPECVFAP YFPPDQPQKF ANVHKVFGAS NVTKLLNELQ 60 PHQREDAVNS LAYEADMRLR DPVYGCVGVI SLLQHQLRQL QMDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-55	10	104	10	104	LOB family transfactor Ramosa2.1
5ly0_B	7e-55	10	104	10	104	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012834587.1	4e-66	PREDICTED: LOB domain-containing protein 6
Swissprot	Q32SG3	1e-58	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	A0A4D8Z3A9	2e-65	A0A4D8Z3A9_SALSN; Uncharacterized protein
STRING	Migut.F01828.1.p	1e-65	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669