PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237304930001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WOX
Protein Properties Length: 275aa    MW: 30662 Da    PI: 7.1643
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237304930001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-093402457
                                  S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +p ++e++++ ++l    ++ +++V++WFqNr+ + k+
  Ote237304930001|237304930001  3 NPPRDEIRRIRAQLqefgQVGDANVFYWFQNRKSRSKH 40
                                  7999*******************************995 PP
2Wus_type_Homeobox681.8e-221422465
             Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                  +++P+++ei+ri+a+L+e+G+++d+NVfyWFQNrk+R+++kq
  Ote237304930001|237304930001  1 MVNPPRDEIRRIRAQLQEFGQVGDANVFYWFQNRKSRSKHKQ 42
                                  78**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.76E-6346IPR009057Homeodomain-like
CDDcd000860.00831342No hitNo description
PfamPF000461.0E-6340IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MVNPPRDEIR RIRAQLQEFG QVGDANVFYW FQNRKSRSKH KQRHLHANKP SPTKXXXXXX  60
XXXXXXXXXX XXXXXXSNKS SASCNSNEKP LSLKFNPSSL IDLLNSPTTS VNQPFLRGSS  120
SIPFIAEPVL FSGQENGGGL THGIWFPDLS ENVGNCSNVL LSDAMQMNIH GCSRKGEDDQ  180
TMKLQQRQIS YADPSVLQGP GLVEPKSTVF INEVCFEVAT GVGFNVTEAF GDDVVLVDSS  240
GQPVPTDEWG LTQQPLQHGA FYYLRSISKP HCQIW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086022.17e-73WUSCHEL-related homeobox 8-like isoform X1
TrEMBLA0A4D8YEK19e-83A0A4D8YEK1_SALSN; Uncharacterized protein
STRINGMigut.M01086.1.p2e-66(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335