PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237406190011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 370aa    MW: 41383.3 Da    PI: 6.5972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237406190011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-075778426
                                  ---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                                  +lC+ffar G C  Gd C FaH+
  Ote237406190011|237406190011 57 VLCKFFAR-GACLKGDHCEFAHD 78
                                  79******.*************5 PP
2zf-CCCH25.32.6e-0886106526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+f+++ G C+yG+rC++ H+
  Ote237406190011|237406190011  86 ICNFYQK-GLCSYGSRCRYEHV 106
                                   7******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2585380IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-55479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-75778IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-55878IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-759111No hitNo description
PROSITE profilePS5010314.39981108IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-483107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-584105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-486105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.211170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.019171196IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.09E-12228303No hitNo description
Gene3DG3DSA:3.30.40.102.3E-8234298IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00132238298No hitNo description
PfamPF000971.1E-6239296IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.032239297IPR001841Zinc finger, RING-type
SMARTSM001842.6E-6239296IPR001841Zinc finger, RING-type
PROSITE patternPS005180263272IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKAEDPGCAT PIYAPIFFSF IDFHSFVIIN QATREFPLGF SRSPWLKADC VMFFSGVLCK  60
FFARGACLKG DHCEFAHDWK APSDNICNFY QKGLCSYGSR CRYEHVKVSS SPSEDISLPI  120
DCPLGSVVST PGFPIDEHSA SVGPFSPPTV DHDMLDDDGR IIDHPNDIGP SDLPICSFAA  180
VGDCPQGENC PNIHGDECPI CKKRCLHPFR PQERELHLRV CEKRQKHLEA LRCSQEIECC  240
VCLEHVFSKP TAAERKFGIL SECDHPFCIS CIRSWRSSSP TFGFNVNSAV RACPVCRRLS  300
YYVIPSAIWY SSREEKQDIV RSYKERLRYK AFYLLLEETN CNGILSAGLL IASTLTLGVE  360
SVHLGQVASI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087508.11e-128E3 ubiquitin-protein ligase makorin
SwissprotE0X9N41e-110C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A4D8XV771e-130A0A4D8XV77_SALSN; E3 ubiquitin-protein ligase makorin
STRINGXP_002526765.11e-117(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33862149
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]