PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237480430021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 95aa    MW: 10954.2 Da    PI: 9.488
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237480430021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.8e-091154344
                                  SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                  +WT+   +++ +a +++  +   +W+ Iar +  g+++++++ ++
  Ote237480430021|237480430021 11 SWTPKQNKQFEEALAKYDRDapdRWHNIARAVT-GKSPEEVRRHY 54
                                  7*****************99************9.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.137762IPR017884SANT domain
SMARTSM007171.4E-8860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-81064IPR009057Homeodomain-like
PfamPF002492.8E-71154IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-131165IPR009057Homeodomain-like
CDDcd001672.60E-71257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MASSSMSRHS SWTPKQNKQF EEALAKYDRD APDRWHNIAR AVTGKSPEEV RRHYEALEKD  60
INNIETDQVP IPNYGAISTA RGYANDHRLM KNLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-27195192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843222.12e-47PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-32RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A022R1R64e-46A0A022R1R6_ERYGU; Uncharacterized protein
STRINGMigut.N00487.1.p6e-47(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231