PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237540160011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 251aa MW: 27625.3 Da PI: 8.218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237540160011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.5	3.6e-11	60	102	3	50
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 ++h+e+ErrRR+riN +++Lr+l+P K++Ka L ++++ Ote237540160011\|237540160011 60 KNHSEAERRRRERINAHLATLRTLIPGT-----NKMDKAGLLGEVINQ 102 58*************************6.....499999999888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.843	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.97E-13	60	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-9	60	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.7E-13	61	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	63	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGYFKSFDGI PEKYLGFQGV VRNIGSSSLV LDNERGELVK SLMKPGQKLA DAEKALIALK 60 NHSEAERRRR ERINAHLATL RTLIPGTNKM DKAGLLGEVI NQVKILRQSA AEATNGTLVP 120 SDIDEVTVEE EEDRSDATSI SIRASLCCDF KHELLSDLRE AVEALPDLKA VRAEISTLGT 180 RMVNVFVISG PKSQQGEGGQ PFVELIRQAF RSVLDKFYAS EELSSRNTSS KRRRVSFFAS 240 SSSTFSSGGV W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100403.1	1e-109	transcription factor bHLH30-like
TrEMBL	A0A1S4BW81	2e-92	A0A1S4BW81_TOBAC; transcription factor bHLH30-like
TrEMBL	A0A1U7X2H7	2e-92	A0A1U7X2H7_NICSY; transcription factor bHLH30-like
STRING	XP_009786357.1	3e-93	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11989	21	23