PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237645050001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 93aa    MW: 9543.48 Da    PI: 8.7978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237645050001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000111840123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C+++F++   L  H r+H
  Ote237645050001|237645050001 18 HECSICHRRFPTGQALGGHKRRH 40
                                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-61542No hitNo description
PfamPF139121.6E-131742IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0161840IPR007087Zinc finger, C2H2
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
NSAASSVAAT ASGSGKAHEC SICHRRFPTG QALGGHKRRH YDGGAGISSG GATSSGSSGG  60
HRNFDLNLPA LPEMFAEDEV ESPHPLKKTR LSL
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022844026.12e-31zinc finger protein ZAT10-like
SwissprotQ424306e-22ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2Z7DC301e-33A0A2Z7DC30_9LAMI; Uncharacterized protein
STRINGXP_009621070.18e-29(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495