PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237869530001

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

TCP

Protein Properties

Length: 281aa MW: 31316.1 Da PI: 10.1013

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237869530001	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.6	2e-29	46	137	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl + k i++l+ + + Ote237869530001\|237869530001 46 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVVDWLLDATKNDIDKLPPLpliptfthshE------- 119 79*************************************************************55553332220....... PP TCP 74 eaesssssasnsssg........k 89 s+ +++ s + Ote237869530001\|237869530001 120 ------SNPHFQPSFshflasnnR 137 ......111111111112222121 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-27	47	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.309	47	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MNSRDKELPL KQEGNPNSNK ITTSSARSQW SSHKNPRIVR VSRSFGGKDR HSKVCTVRGL 60 RDRRIRLSVP TAIQLYDLQD KLGLSQPSKV VDWLLDATKN DIDKLPPLPL IPTFTHSHES 120 NPHFQPSFSH FLASNNRVSP SKQGLKISDQ ENHEGFGGFV AQLSAQNLFP LGNVNQPSFP 180 SMPYNPYFHW DHTNMPFSHV GGAFPLPNQA QDQSQIVLPS SSQLYLPANI PSFPSSYITP 240 SMENVQQNPF FSTALHLSST MKAFPLNVNA KSDTGRSGKD D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-18	52	106	1	55	Putative transcription factor PCF6
5zkt_B	3e-18	52	106	1	55	Putative transcription factor PCF6
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087359.1	9e-95	transcription factor TCP5
TrEMBL	A0A4D9A3P1	1e-84	A0A4D9A3P1_SALSN; Uncharacterized protein
STRING	Migut.D01635.1.p	6e-70	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA821	24	99