PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237870830001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 105aa    MW: 11557.2 Da    PI: 10.9825
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237870830001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-192979155
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  s y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Ote237870830001|237870830001 29 SLYRGVRKRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAALAIKG 79
                                  57*****887.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-222987IPR016177DNA-binding domain
CDDcd000184.84E-322988No hitNo description
SMARTSM003803.0E-363093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-333088IPR001471AP2/ERF domain
PROSITE profilePS5103223.423087IPR001471AP2/ERF domain
PfamPF008474.0E-133079IPR001471AP2/ERF domain
PRINTSPR003672.8E-113142IPR001471AP2/ERF domain
PRINTSPR003672.8E-115369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MANSEPECSN TTGSGPKNNL KRARDSPHSL YRGVRKRAWG KWVSEIREPK KKSRIWLGTF  60
ATAEMAARAH DVAALAIKGS AAILNFPEIS DLLPRPTTSS PRDVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-212292677Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093630.13e-52ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-41DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A4D9AHT57e-46A0A4D9AHT5_SALSN; EREBP-like factor
STRINGcassava4.1_032789m1e-43(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]