PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237887350021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 120aa    MW: 13802.7 Da    PI: 10.1637
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237887350021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-095092347
                                  SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Ote237887350021|237887350021 50 AWTRQEEESFFSALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 92
                                  6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-114397IPR009057Homeodomain-like
PROSITE profilePS5129313.4134697IPR017884SANT domain
SMARTSM007173.2E-64795IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-74995IPR009057Homeodomain-like
CDDcd001676.09E-75093No hitNo description
PfamPF002491.8E-75092IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVTQVSLDHE LRICPDYLGS KDGDTSVPPS SQGQAAPQMP AKKQTRQWAA WTRQEEESFF  60
SALRQVGKNF EKITSRVQSK NKDQVRHYYY RLVRRMNKLL GPELCLDAKN SKDTNAAMLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077326.11e-63TSL-kinase interacting protein 1 isoform X1
RefseqXP_020549588.11e-63TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT81e-46TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2G9H0X96e-65A0A2G9H0X9_9LAMI; Polycomb-group transcriptional regulator
STRINGEOY078875e-51(Theobroma cacao)
STRINGcassava4.1_024564m6e-52(Manihot esculenta)
STRINGSolyc09g008100.2.15e-51(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86401719