PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote237891870001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family LBD
Protein Properties Length: 56aa    MW: 6220.27 Da    PI: 9.4269
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote237891870001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260682.2e-211055146
                        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46
                                  +CaaCk+lrrkC+++C+++ yfp e+p+kfanvhk+FGasnv kll
  Ote237891870001|237891870001 10 PCAACKFLRRKCVPSCIFSSYFPPEEPHKFANVHKIFGASNVAKLL 55
                                  7*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.427956IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-211056IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 56 aa     Download sequence    Send to blast
MASTSTYNPP CAACKFLRRK CVPSCIFSSY FPPEEPHKFA NVHKIFGASN VAKLLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-25356457LOB family transfactor Ramosa2.1
5ly0_B5e-25356457LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNot known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014490594.17e-29protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_014490595.17e-29protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_022633199.17e-29protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_022633200.17e-29protein LATERAL ORGAN BOUNDARIES-like
RefseqXP_022633201.17e-29protein LATERAL ORGAN BOUNDARIES-like
SwissprotQ9FML42e-28LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBLA0A4D9AFI13e-29A0A4D9AFI1_SALSN; Uncharacterized protein
STRINGMigut.O00138.1.p4e-28(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]
  2. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]