PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237979190021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 701aa MW: 78394.5 Da PI: 6.8688

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237979190021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.3	3e-14	67	105	18	56
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 lF+++++p++++r +L+k+l+L rqVk+WFqNrR++ k Ote237979190021\|237979190021 67 LFKESPHPDEKQRLHLSKQLSLHPRQVKFWFQNRRTQIK 105 79*********************************9877 PP
2	START	190.5	8.5e-60	218	440	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqW 72 + ++a +el k+a+ +ep+W s+ e++n+de++++f+ ++ +s+ea+r s++ + +l+ lv++++d + qW Ote237979190021\|237979190021 218 VVNRAVDELRKMASHGEPLWIWSYetgrEILNYDEYRKEFSAQNRsslqprKSVEASRKSALIFVDLPWLVQTFMDAN-QW 297 567899********************************988779****************************. PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTS CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssv 142 +e ++ ka+t++vi++g ga qlm+ae q+l+plv+ R+++fvRy++q g w++vdvSvd +++ ++s+ Ote237979190021\|237979190021 298 KELFPclvsKADTVDVICKGegnnrdGAAQLMYAEIQMLTPLVAtRKVYFVRYSKQIGTNEWAVVDVSVDKVEDNI-DASL 377 ************************************************************************98.9* PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++++pSg++ie+k ngh+kvtwveh + + +++h l+r +v+sgla+ga++w +tlq+qc Ote237979190021\|237979190021 378 QKCRKRPSGCIIEDKNNGHCKVTWVEHLERQRSTVHPLYRNIVNSGLAFGANHWISTLQQQCD 440 **************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.0E-8	52	111	IPR001356	Homeobox domain
CDD	cd00086	1.41E-11	62	105	No hit	No description
SuperFamily	SSF46689	1.09E-12	67	112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-13	67	115	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-11	67	105	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.588	68	107	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.762	208	444	IPR002913	START domain
SuperFamily	SSF55961	1.06E-31	211	441	No hit	No description
CDD	cd08875	1.70E-99	212	439	No hit	No description
SMART	SM00234	9.1E-58	217	441	IPR002913	START domain
Pfam	PF01852	1.8E-47	218	440	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.6E-4	272	440	IPR023393	START-like domain
SuperFamily	SSF55961	5.22E-14	469	665	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MSNLPTDLLA SHPALSLTLA GIFRSGGAAA EGGIDGGEDA VEISSENSAA GKSRSDEDYE 60 GEQRNFLFKE SPHPDEKQRL HLSKQLSLHP RQVKFWFQNR RTQIKAIQER HENSLLKSEI 120 DNLRVENKEL REAIEKKQFC PNCGFASANR DAAATEDQKL RIENVKLKAE VEKLKTVIGK 180 HPRGTSPSNP PSDVQENRRS FEFDSGNSGL GKTRIMEVVN RAVDELRKMA SHGEPLWIWS 240 YETGREILNY DEYRKEFSAQ NRSSLQPRKS VEASRKSALI FVDLPWLVQT FMDANQWKEL 300 FPCLVSKADT VDVICKGEGN NRDGAAQLMY AEIQMLTPLV ATRKVYFVRY SKQIGTNEWA 360 VVDVSVDKVE DNIDASLQKC RKRPSGCIIE DKNNGHCKVT WVEHLERQRS TVHPLYRNIV 420 NSGLAFGANH WISTLQQQCD RLVFLVATNV PVKDSSGVAT VAGRKSILEL AQRMSRNFCR 480 AFSDSSFNSW SKITTKTGDE IRVSTRKNQN DAGEPLGTIL SAVSCLWLPV RHHVLFDFLR 540 DEARRNEWDI MSNGSSVQTI ANLAKGQDRG NTVTAMAMKN EEREMWLLQD ISTNAYESMI 600 VYAPVDINGM RAVMTGCDWS KIAVLPSGFS ILPDGIESRP VVITCGPEEE SSEGGSLLTM 660 ASQILISNSS MSKLSVDSVD SVSTLISCTL HNIKNSLQRD D

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MSNLPTDLLA SHPALSLTLA GIFRSGGAAA EGGIDGGEDA VEISSENSAA GKSRSDEDYE  60
GEQRNFLFKE SPHPDEKQRL HLSKQLSLHP RQVKFWFQNR RTQIKAIQER HENSLLKSEI  120
DNLRVENKEL REAIEKKQFC PNCGFASANR DAAATEDQKL RIENVKLKAE VEKLKTVIGK  180
HPRGTSPSNP PSDVQENRRS FEFDSGNSGL GKTRIMEVVN RAVDELRKMA SHGEPLWIWS  240
YETGREILNY DEYRKEFSAQ NRSSLQPRKS VEASRKSALI FVDLPWLVQT FMDANQWKEL  300
FPCLVSKADT VDVICKGEGN NRDGAAQLMY AEIQMLTPLV ATRKVYFVRY SKQIGTNEWA  360
VVDVSVDKVE DNIDASLQKC RKRPSGCIIE DKNNGHCKVT WVEHLERQRS TVHPLYRNIV  420
NSGLAFGANH WISTLQQQCD RLVFLVATNV PVKDSSGVAT VAGRKSILEL AQRMSRNFCR  480
AFSDSSFNSW SKITTKTGDE IRVSTRKNQN DAGEPLGTIL SAVSCLWLPV RHHVLFDFLR  540
DEARRNEWDI MSNGSSVQTI ANLAKGQDRG NTVTAMAMKN EEREMWLLQD ISTNAYESMI  600
VYAPVDINGM RAVMTGCDWS KIAVLPSGFS ILPDGIESRP VVITCGPEEE SSEGGSLLTM  660
ASQILISNSS MSKLSVDSVD SVSTLISCTL HNIKNSLQRD D

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072373.1	0.0	homeobox-leucine zipper protein GLABRA 2 isoform X1
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A2G9G2L4	0.0	A0A2G9G2L4_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRING	VIT_09s0002g04340.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6228	23	28

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]