PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote237979190031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HD-ZIP

Protein Properties

Length: 682aa MW: 76418.2 Da PI: 6.9677

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote237979190031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.3	2.9e-14	48	86	18	56
HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 lF+++++p++++r +L+k+l+L rqVk+WFqNrR++ k Ote237979190031\|237979190031 48 LFKESPHPDEKQRLHLSKQLSLHPRQVKFWFQNRRTQIK 86 79*********************************9877 PP
2	START	190.6	8e-60	199	421	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqW 72 + ++a +el k+a+ +ep+W s+ e++n+de++++f+ ++ +s+ea+r s++ + +l+ lv++++d + qW Ote237979190031\|237979190031 199 VVNRAVDELRKMASHGEPLWIWSYetgrEILNYDEYRKEFSAQNRsslqprKSVEASRKSALIFVDLPWLVQTFMDAN-QW 278 567899********************************988779****************************. PP -TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTS CS START 73 detla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssv 142 +e ++ ka+t++vi++g ga qlm+ae q+l+plv+ R+++fvRy++q g w++vdvSvd +++ ++s+ Ote237979190031\|237979190031 279 KELFPclvsKADTVDVICKGegnnrdGAAQLMYAEIQMLTPLVAtRKVYFVRYSKQIGTNEWAVVDVSVDKVEDNI-DASL 358 ************************************************************************98.9* PP EE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 143 vRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++++pSg++ie+k ngh+kvtwveh + + +++h l+r +v+sgla+ga++w +tlq+qc Ote237979190031\|237979190031 359 QKCRKRPSGCIIEDKNNGHCKVTWVEHLERQRSTVHPLYRNIVNSGLAFGANHWISTLQQQCD 421 **************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.0E-8	33	92	IPR001356	Homeobox domain
CDD	cd00086	1.84E-11	43	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-13	48	96	IPR009057	Homeodomain-like
Pfam	PF00046	1.4E-11	48	86	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.04E-12	48	93	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.588	49	88	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	63	86	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.762	189	425	IPR002913	START domain
SuperFamily	SSF55961	1.0E-31	192	422	No hit	No description
CDD	cd08875	9.43E-100	193	420	No hit	No description
SMART	SM00234	9.1E-58	198	422	IPR002913	START domain
Pfam	PF01852	1.7E-47	199	421	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	2.5E-4	252	421	IPR023393	START-like domain
SuperFamily	SSF55961	4.94E-14	450	646	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
AGIFRSGGAA AEGGIDGGED AVEISSENSA AGKSRSDEDY EGEQRNFLFK ESPHPDEKQR 60 LHLSKQLSLH PRQVKFWFQN RRTQIKAIQE RHENSLLKSE IDNLRVENKE LREAIEKKQF 120 CPNCGFASAN RDAAATEDQK LRIENVKLKA EVEKLKTVIG KHPRGTSPSN PPSDVQENRR 180 SFEFDSGNSG LGKTRIMEVV NRAVDELRKM ASHGEPLWIW SYETGREILN YDEYRKEFSA 240 QNRSSLQPRK SVEASRKSAL IFVDLPWLVQ TFMDANQWKE LFPCLVSKAD TVDVICKGEG 300 NNRDGAAQLM YAEIQMLTPL VATRKVYFVR YSKQIGTNEW AVVDVSVDKV EDNIDASLQK 360 CRKRPSGCII EDKNNGHCKV TWVEHLERQR STVHPLYRNI VNSGLAFGAN HWISTLQQQC 420 DRLVFLVATN VPVKDSSGVA TVAGRKSILE LAQRMSRNFC RAFSDSSFNS WSKITTKTGD 480 EIRVSTRKNQ NDAGEPLGTI LSAVSCLWLP VRHHVLFDFL RDEARRNEWD IMSNGSSVQT 540 IANLAKGQDR GNTVTAMAMK NEEREMWLLQ DISTNAYESM IVYAPVDING MRAVMTGCDW 600 SKIAVLPSGF SILPDGIESR PVVITCGPEE ESSEGGSLLT MASQILISNS SMSKLSVDSV 660 DSVSTLISCT LHNIKNSLQR DD

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

AGIFRSGGAA AEGGIDGGED AVEISSENSA AGKSRSDEDY EGEQRNFLFK ESPHPDEKQR  60
LHLSKQLSLH PRQVKFWFQN RRTQIKAIQE RHENSLLKSE IDNLRVENKE LREAIEKKQF  120
CPNCGFASAN RDAAATEDQK LRIENVKLKA EVEKLKTVIG KHPRGTSPSN PPSDVQENRR  180
SFEFDSGNSG LGKTRIMEVV NRAVDELRKM ASHGEPLWIW SYETGREILN YDEYRKEFSA  240
QNRSSLQPRK SVEASRKSAL IFVDLPWLVQ TFMDANQWKE LFPCLVSKAD TVDVICKGEG  300
NNRDGAAQLM YAEIQMLTPL VATRKVYFVR YSKQIGTNEW AVVDVSVDKV EDNIDASLQK  360
CRKRPSGCII EDKNNGHCKV TWVEHLERQR STVHPLYRNI VNSGLAFGAN HWISTLQQQC  420
DRLVFLVATN VPVKDSSGVA TVAGRKSILE LAQRMSRNFC RAFSDSSFNS WSKITTKTGD  480
EIRVSTRKNQ NDAGEPLGTI LSAVSCLWLP VRHHVLFDFL RDEARRNEWD IMSNGSSVQT  540
IANLAKGQDR GNTVTAMAMK NEEREMWLLQ DISTNAYESM IVYAPVDING MRAVMTGCDW  600
SKIAVLPSGF SILPDGIESR PVVITCGPEE ESSEGGSLLT MASQILISNS SMSKLSVDSV  660
DSVSTLISCT LHNIKNSLQR DD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072373.1	0.0	homeobox-leucine zipper protein GLABRA 2 isoform X1
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A2G9G2L4	0.0	A0A2G9G2L4_9LAMI; Transcription factor PHOX2/ARIX, contains HOX domain
STRING	VIT_09s0002g04340.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6228	23	28

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]