PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote238038890041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 227aa    MW: 25771.4 Da    PI: 7.5766
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote238038890041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34221132102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+y ++ed++++++isw++ g++fvv+++ efa ++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF+
  Ote238038890041|238038890041  22 FLLKTYMLVEDPATDDVISWNDAGTAFVVWQPAEFAADLLPTLFKHSNFSSFVRQLNTYGFRKVASNR---------WEFS 93 
                                   9****************************************************************998.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   +++F+kg+++ l++i+r+k 
  Ote238038890041|238038890041  94 NDKFRKGERDRLCEIRRRKA 113
                                   *****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.4E-3615106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.58E-3218111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.9E-5318111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-192245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3122111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-197385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MEAGERDKEL VEYVRKASPP PFLLKTYMLV EDPATDDVIS WNDAGTAFVV WQPAEFAADL  60
LPTLFKHSNF SSFVRQLNTY GFRKVASNRW EFSNDKFRKG ERDRLCEIRR RKAWSXXXXX  120
XXXXXXAAEP PPEEQRSSST SSSSEFTTLI DENKRLKQEN GVLSSELAIM KKKCKELLDL  180
VAVHGGEAEE GPKLFGVRLG VKGEMENKRK RGHEMGESAG LLIHANN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-21221114104Putative transcription factor
5d5x_B2e-21221114104Putative transcription factor
5d5x_E2e-21221114104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033345.11e-102PREDICTED: heat stress transcription factor B-3-like
RefseqXP_012828086.11e-101PREDICTED: heat stress transcription factor B-3
RefseqXP_022888274.11e-101heat stress transcription factor B-3-like
SwissprotO222304e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A4D9A2M11e-109A0A4D9A2M1_SALSN; Heat shock transcription factor, other eukaryote
STRINGMigut.J01747.1.p1e-101(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241