PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote238045830041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 222aa MW: 24683.8 Da PI: 8.2055

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote238045830041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.6e-08	14	59	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N+ f eL ll ++ K +K +i + +++ +k+L Ote238045830041\|238045830041 14 KADREKLRRDKLNEHFLELGNLLDPD----RAKSDKGSIITDTIQVLKDL 59 678******************997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.335	9	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.88E-8	10	64	No hit	No description
SuperFamily	SSF47459	4.97E-12	10	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-11	11	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-6	13	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-7	15	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEVNNTVSTK KVIKADREKL RRDKLNEHFL ELGNLLDPDR AKSDKGSIIT DTIQVLKDLN 60 CEVKKLKTDH EVLCEESREL TQEKNELREE KASLKSTIQD LKAQQHQRTQ GFMVPWDSSI 120 LMVPSFPFPV AVSVPPGSVP ARPLPSYVNQ YSATSTFIPY TTASTSYVSR PRVSSASSIN 180 QQRSSTSITG NSDDIASDLE LKIPGSAPPK GLPTREKGKQ EE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021815506.1	3e-64	transcription factor bHLH121-like
Refseq	XP_021815513.1	3e-64	transcription factor bHLH121-like
Swissprot	Q9LT23	2e-47	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A0H3YC44	1e-81	A0A0H3YC44_SALMI; Basic helix-loop-helix transcription factor
STRING	EMJ06100	1e-63	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA24839	2	2

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]