PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote238055620031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family bHLH
Protein Properties Length: 242aa    MW: 26201.6 Da    PI: 9.4674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote238055620031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11174219655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++IksLq
  Ote238055620031|238055620031 174 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKSLQ 219
                                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.986168218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14171232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-10172223No hitNo description
Gene3DG3DSA:4.10.280.109.5E-14173231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-9174219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKVNPRASLN VDSTTTFGNP YSLHKIAGFS VTRGIGSYNS KGIAETGGIT RLNSQLSFTG  60
KEPLSRITEE AEEVAAAMDN NKKPTHSYGA AGGGAAAAFG MWEPNSNPIM FSVAQPSRGK  120
NVNNGLDSIE SQFQFSISET AQDMASMEKL LNIPQDSVTC KIRAKRGCAT HPRSIAERER  180
RTRISGKLKK LQDLVPNMDK QTSYSDMLDL AVQHIKSLQG QVEKLHKDLD SCTCGCKKTG  240
NS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022873721.11e-93transcription factor bHLH128-like isoform X1
SwissprotQ8H1021e-63BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0H3YBT21e-123A0A0H3YBT2_SALMI; Basic helix-loop-helix transcription factor
STRINGXP_009620076.15e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]