PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1000401g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 274aa    MW: 31828.3 Da    PI: 7.3922
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1000401g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM34.94.5e-116117019128
                 NAM  19 Lkkkvegkk.leleev.ikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                         L++k++g+k l+  +   +  d+++++P++Lp    v  + +e  +F++      +g rk r+ + g+W a   + e+ + ++++ g  + 
  PDK_30s1000401g001  61 LENKLSGRKlLSSLDEgRRLNDLFNYKPEELPDvtGVPDKGEERLYFTSPIWV--NGMRK-RSSEFGRWDARDGKLEIRDLEKREFGFIQH 148
                         7788888886333344144459**********423444466677777776554..56665.55689**************9********** PP

                 NAM 106 LvfykgrapkgektdWvmheyrl 128
                         L++++g   +g++t+W m+ey+l
  PDK_30s1000401g001 149 LIYFQG-GCRGTRTKWAMKEYTL 170
                         ****76.56789*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.16E-5349IPR001810F-box domain
PROSITE profilePS5100515.58144190IPR003441NAC domain
PfamPF023653.2E-468170IPR003441NAC domain
SuperFamilySSF1019414.32E-1379190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEDLIPGLQE EIARECLLRV PHKAFRTARS VCKIWKQVAA KPRRSPKPWL LNRHREHLHR  60
LENKLSGRKL LSSLDEGRRL NDLFNYKPEE LPDVTGVPDK GEERLYFTSP IWVNGMRKRS  120
SEFGRWDARD GKLEIRDLEK REFGFIQHLI YFQGGCRGTR TKWAMKEYTL ASSRIPYGVD  180
ELALCVIYKT RDYKSNETSC RKKLKPKTPS DDGGPSTSSE PIVQAEDPMG ELTDLSFDDF  240
FAPVKFPLDP IMDLENDIPW FGDVCCDFDN QEWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.16e-12NAC domain containing protein 35