PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1010761g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 373aa MW: 41437.4 Da PI: 4.8324

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1010761g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.7	4.7e-12	45	88	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT E + l++a+ +G + Wk++a+++g R++k+c+ r+ k+ PDK_30s1010761g003 45 TDWTDKETLHLLEAILHYGED-WKKVAEHVG-SRSEKDCVARFIKL 88 57***************99.*****.********9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	19.267	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	5.91E-13	43	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-9	43	85	IPR009057	Homeodomain-like
SMART	SM00717	8.4E-10	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-11	45	88	IPR001005	SANT/Myb domain
CDD	cd00167	2.13E-8	47	88	No hit	No description
Pfam	PF16495	9.0E-12	204	279	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MAICHQNLKV ADIILCARCF VRGNYRPGLS STDFKRVDIS EETKTDWTDK ETLHLLEAIL 60 HYGEDWKKVA EHVGSRSEKD CVARFIKLPF GEQFLGPPEI GEDGKQYEKN DHVSAGHEET 120 NVAVSCPTKR RHLTPLTDAS NPIMAQVAFL SAMAGSDVVK AAAQAAISAL HEVDLASMSS 180 LNGKNIGIDE KEAFCPNDQP VEEAIKEAAA EAHSQLEREH QDVERSISDI VEVQMKDVQD 240 KIVHFEEVEL QLERERLQLR YMKDLLFADQ STVSQHNARL MFKGNDDLEK FRLDSNCDPT 300 GQHPSNDSGH SRPNWTLLKD GSVGSEPQAV GVDFPSSDAN LECSSWAIYS LEETSQGLLG 360 KIVSPQRVAL TKL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MAICHQNLKV ADIILCARCF VRGNYRPGLS STDFKRVDIS EETKTDWTDK ETLHLLEAIL  60
HYGEDWKKVA EHVGSRSEKD CVARFIKLPF GEQFLGPPEI GEDGKQYEKN DHVSAGHEET  120
NVAVSCPTKR RHLTPLTDAS NPIMAQVAFL SAMAGSDVVK AAAQAAISAL HEVDLASMSS  180
LNGKNIGIDE KEAFCPNDQP VEEAIKEAAA EAHSQLEREH QDVERSISDI VEVQMKDVQD  240
KIVHFEEVEL QLERERLQLR YMKDLLFADQ STVSQHNARL MFKGNDDLEK FRLDSNCDPT  300
GQHPSNDSGH SRPNWTLLKD GSVGSEPQAV GVDFPSSDAN LECSSWAIYS LEETSQGLLG  360
KIVSPQRVAL TKL

Functional Description ? help Back to Top
Source	Description
UniProt	Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. May play an essential role in the transition from the vegetative to the reproductive phase of development. May be a positive regulator of ABA signaling. {ECO:0000269\|PubMed:12140326, ECO:0000269\|PubMed:14682613, ECO:0000269\|PubMed:16055636, ECO:0000269\|PubMed:19033529}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008805483.1	0.0	SWI/SNF complex subunit SWI3B
Swissprot	Q84JG2	2e-71	SWI3B_ARATH; SWI/SNF complex subunit SWI3B
TrEMBL	A0A2H3YYP6	0.0	A0A2H3YYP6_PHODC; SWI/SNF complex subunit SWI3B
STRING	XP_008805483.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9417	4	4

Publications ? help Back to Top
Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Nucleic Acids Res., 2002. 30(15): p. 3412-21 [PMID:12140326] Zhou C,Miki B,Wu K CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis. Plant Mol. Biol., 2003. 52(6): p. 1125-34 [PMID:14682613] Sarnowski TJ, et al. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Plant Cell, 2005. 17(9): p. 2454-72 [PMID:16055636] Archacki R, et al. Genetic analysis of functional redundancy of BRM ATPase and ATSWI3C subunits of Arabidopsis SWI/SNF chromatin remodelling complexes. Planta, 2009. 229(6): p. 1281-92 [PMID:19301030] Zhu Y,Rowley MJ,Böhmdorfer G,Wierzbicki AT A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing. Mol. Cell, 2013. 49(2): p. 298-309 [PMID:23246435] Liu ZW, et al. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. PLoS Genet., 2016. 12(5): p. e1006026 [PMID:27171427] Han W, et al. The SWI/SNF subunit SWI3B regulates IAMT1 expression via chromatin remodeling in Arabidopsis leaf development. Plant Sci., 2018. 271: p. 127-132 [PMID:29650150]