PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1011711g005

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 318aa MW: 35711.9 Da PI: 8.4603

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1011711g005	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.7	6.8e-51	12	141	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPt+eel+ +yL+kkv+++k++l evi+e+d +k+ePwdL++ ++ + e+ewyfF ++d ky+tg+r+nrat++g+Wk+tg+ PDK_30s1011711g005 12 VPPGFRFHPTEEELLLYYLQKKVSSEKFDL-EVIREIDFNKIEPWDLQErcRIGStLENEWYFFNHKDCKYPTGSRTNRATNAGFWKTTGR 101 69**************************.99**********963433222456**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk + + + +++g++ktLvfy+grap+g+kt+W+mheyrle PDK_30s1011711g005 102 DKCIRT-SYKKIGMRKTLVFYRGRAPHGQKTHWIMHEYRLE 141 *9.8999**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-57	7	167	IPR003441	NAC domain
PROSITE profile	PS51005	55.3	12	167	IPR003441	NAC domain
Pfam	PF02365	5.2E-27	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MASSSSSSNS GVPPGFRFHP TEEELLLYYL QKKVSSEKFD LEVIREIDFN KIEPWDLQER 60 CRIGSTLENE WYFFNHKDCK YPTGSRTNRA TNAGFWKTTG RDKCIRTSYK KIGMRKTLVF 120 YRGRAPHGQK THWIMHEYRL EEDSGATAGS SSSNAEGGWV VCRVFKKKCF FKPGTESRAS 180 QGSENYMMTT ASHGQLWPLS SQCIHPHPAS NHYYSQLPLQ SYSHAQVQDL LSNHRPTGCN 240 FSVLPGESSA MVRPYEGELQ AGAMQPVGEG IRDQSLNDWA VIGGVDRRFG SVGGAAVQQM 300 NQVSGQHGGE MDLWGYGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-50	12	168	20	169	NAC domain-containing protein 19
3swm_B	7e-50	12	168	20	169	NAC domain-containing protein 19
3swm_C	7e-50	12	168	20	169	NAC domain-containing protein 19
3swm_D	7e-50	12	168	20	169	NAC domain-containing protein 19
3swp_A	7e-50	12	168	20	169	NAC domain-containing protein 19
3swp_B	7e-50	12	168	20	169	NAC domain-containing protein 19
3swp_C	7e-50	12	168	20	169	NAC domain-containing protein 19
3swp_D	7e-50	12	168	20	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026658225.1	0.0	protein BEARSKIN1-like
Swissprot	Q9SV87	1e-94	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A3Q0HXZ4	0.0	A0A3Q0HXZ4_PHODC; protein BEARSKIN1-like
STRING	XP_008782099.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9297	30	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	2e-74	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]