PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1014831g008
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 224aa    MW: 24606.3 Da    PI: 4.9586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1014831g008genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.3e-205099255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a+++a+ kl+g
  PDK_30s1014831g008 50 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAKEAALAYDRAAYKLRG 99
                        59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.80E-3349109No hitNo description
SMARTSM003802.8E-3650113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3250108IPR001471AP2/ERF domain
PROSITE profilePS5103222.93250107IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2350108IPR016177DNA-binding domain
PfamPF008473.9E-145199IPR001471AP2/ERF domain
PRINTSPR003676.2E-115162IPR001471AP2/ERF domain
PRINTSPR003676.2E-117389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTAAIDIFNC LSDPLREELM QALEPFIRGV SAASSSYSSS SHTTTPPAKL YRGVRQRHWG  60
KWVAEIRLPR NRTRLWLGTF DTAKEAALAY DRAAYKLRGD AARLNFPELR CSGAHLSVPL  120
HSSVDAKLQS ICQSLASSKK QGNGLSGSVI PEEIGPKSEL GCSGTDDNKS ESSSSDESSS  180
GSLAVSEMQY LDFTEAPWDE SESFMLTKYP SWDIDWESIL SSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2149107160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916895.11e-118ethylene-responsive transcription factor RAP2-4
SwissprotO656657e-63ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A2H3YUL91e-117A0A2H3YUL9_PHODC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_008803760.11e-117(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-57ERF family protein