PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1016001g009

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 334aa MW: 38633.3 Da PI: 7.0013

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1016001g009	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv++yL+kkv+++ ++l +vik+vd+yk+ePwdL++ k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+ PDK_30s1016001g009 7 VPPGFRFHPTDEELVDYYLRKKVASRGIDL-DVIKDVDLYKIEPWDLQEkcKIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 96 69**************************.9***********952444443555**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk+++s k++l+g++ktLvfykgrap+g+k+dW+mheyrle PDK_30s1016001g009 97 DKPIYS-KNNLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 **.899***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.773	7	156	IPR003441	NAC domain
Pfam	PF02365	6.7E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MTTFSHVPPG FRFHPTDEEL VDYYLRKKVA SRGIDLDVIK DVDLYKIEPW DLQEKCKIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKPI YSKNNLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRVTA MRGVSEHESP RWYDEQSSFM 180 QDLDSAKQIA PRPDMAYHHH LYSCKPEQDL PHLMPNDSFL QLPQLESPKL PNNVNHACDL 240 QSSTIRPEEP MQHGRQLQII SIYNSSGSTD QSAEQVTDWR VLDKFVASQL SHDVVSKEPN 300 YSNPAQVFHL SDKKEATVEY ASTSTSSGQI NLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	7	162	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	7	162	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	7	162	20	174	NAC domain-containing protein 19
3swm_B	4e-52	7	162	20	174	NAC domain-containing protein 19
3swm_C	4e-52	7	162	20	174	NAC domain-containing protein 19
3swm_D	4e-52	7	162	20	174	NAC domain-containing protein 19
3swp_A	4e-52	7	162	20	174	NAC domain-containing protein 19
3swp_B	4e-52	7	162	20	174	NAC domain-containing protein 19
3swp_C	4e-52	7	162	20	174	NAC domain-containing protein 19
3swp_D	4e-52	7	162	20	174	NAC domain-containing protein 19
4dul_A	4e-52	7	162	17	171	NAC domain-containing protein 19
4dul_B	4e-52	7	162	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796844.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-135	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2H3YCP6	0.0	A0A2H3YCP6_PHODC; NAC domain-containing protein 7
STRING	XP_008796844.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-127	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]