PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1016001g010
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family YABBY
Protein Properties Length: 229aa    MW: 25056.4 Da    PI: 7.3277
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1016001g010genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2312.9e-71161916170
               YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...........lleelkveeenlksn 85 
                          seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++      a +  l++ +  +               l +++ +l+sn
  PDK_30s1016001g010  16 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLGLGHPFLAPshhnlldeipcPPPSLPMDQPSLNSN 106
                         68****************************************8777665444444445566665556775444443233444555555555 PP

               YABBY  86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +++  +++++++++   + ++ee+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  PDK_30s1016001g010 107 NSNGANHNHNHNTMAPAKGTEEELPQNPVANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 191
                         5555544444444444889999*************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-7216191IPR006780YABBY protein
SuperFamilySSF470951.44E-7136184IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-4140183IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSVCAAFSLD QLSPPPSEQL CYVHCNFCDT VLAVSVPCSS LFKTVTVRCG HCTNLLSVNM  60
RGLLLPAANQ LGLGHPFLAP SHHNLLDEIP CPPPSLPMDQ PSLNSNNSNG ANHNHNHNTM  120
APAKGTEEEL PQNPVANRPP EKRQRVPSAY NRFIKDEIQR IKAGNPDITH REAFSAAAKN  180
WAHFPHIHFG LMPDQGLRKN SVRQQEGEDV LLKDGFYAAA AANMGITPF
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796843.11e-168protein YABBY 4-like
SwissprotQ01JG25e-90YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF05e-90YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A2H3YCT91e-166A0A2H3YCT9_PHODC; protein YABBY 4-like
STRINGXP_008796843.11e-167(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-82YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]