PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1017251g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 573aa    MW: 64314.9 Da    PI: 5.7961
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1017251g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.91.9e-23130230198
                         EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                         f+k+lt sd++++g +++ +++a+e+     +++ + +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD ++F++  
  PDK_30s1017251g001 130 FCKILTASDTSTHGGFSVLRRHATEClppldMSQATPTQELAAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFIFMRG- 219
                         99****************************9555566679************************************************54. PP

                         SSEE..EEEEE- CS
                  B3  87 rsefelvvkvfr 98 
                           ++el+v+v+r
  PDK_30s1017251g001 220 -GNEELCVGVRR 230
                         .56777***998 PP
2Auxin_resp102.94.1e-34256335183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+st+s F+v+Y+Pr   s+F+v+v+k+++a k+ ++vGmRfkm+fe+ed++e+r++Gt++gv d+++ +W +SkWrsLk
  PDK_30s1017251g001 256 ASHAVSTHSLFTVYYKPRI--SQFIVRVNKYLEAAKNGFAVGMRFKMRFEGEDVPEKRITGTITGVGDISS-QWAGSKWRSLK 335
                         789***************8..9**********************************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-40119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-39125245IPR015300DNA-binding pseudobarrel domain
CDDcd100176.65E-19129230No hitNo description
PfamPF023621.7E-21130230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561130232IPR003340B3 DNA binding domain
SMARTSM010198.2E-22130232IPR003340B3 DNA binding domain
PfamPF065071.3E-31256335IPR010525Auxin response factor
PfamPF023093.7E-14455557IPR033389AUX/IAA domain
SuperFamilySSF542779.32E-14467548No hitNo description
PROSITE profilePS5174525.956472553IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MAFVSASPAS RPSETLEAGW GEEGLYEELW KACAGPLVEV PRGDERVFYF PQGHMEQLVS  60
STDQELDQQI PLFNLPPKIL CRVVNIQLRA EPETDEVYAQ ITLLPEADQS EPTSPDPCLP  120
EPRRPTVNSF CKILTASDTS THGGFSVLRR HATECLPPLD MSQATPTQEL AAKDLHGFEW  180
RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFIFMRGG NEELCVGVRR LARQQNTIPS  240
SVISSQSMHL GVLATASHAV STHSLFTVYY KPRISQFIVR VNKYLEAAKN GFAVGMRFKM  300
RFEGEDVPEK RITGTITGVG DISSQWAGSK WRSLKVQWDE ATSIQRPERV SPWDIEPFTG  360
PMTALNVTQP VFMKNKRSRS PLDLSSLEKW KKPESSSSCR LFGIDLVNPS GGIETATVGH  420
ISLSSYAMED PLQVTASLED SDQHPEKAPK EPKQELQVSP KEIQRKQNCS TRSRTKVHMQ  480
GIAVGRAVDL TNLESYDDLI LELEEMFEVK GELHHRNKWE VVYTDDEGDV MLVGDDPWPE  540
FCKMVKKIYI YTSEEVLGEK GGVIPLESTQ FTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-17693593356Auxin response factor 1
4ldw_A1e-17693593356Auxin response factor 1
4ldw_B1e-17693593356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807236.10.0auxin response factor 11-like isoform X2
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLA0A2H3Z2260.0A0A2H3Z226_PHODC; Auxin response factor
STRINGXP_008807235.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.10.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]