PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1021181g006

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NF-YB

Protein Properties

Length: 193aa MW: 22110.1 Da PI: 9.0532

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1021181g006	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	148.3	1.6e-46	55	148	3	96
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 q+++lPianv+rimk++lP+na+isk aket+qec+sefisfvt+ea+++c++ekrktingdd++ a+ tlG+++y++++k yl +yre PDK_30s1021181g006 55 GQNHLLPIANVGRIMKQALPNNARISKPAKETMQECASEFISFVTEEATEQCRKEKRKTINGDDICSAMKTLGLDEYADAMKRYLCRYREH 145 5899**************************************************************************************9 PP NF-YB 94 ege 96 e++ PDK_30s1021181g006 146 EEK 148 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.9E-45	53	159	IPR009072	Histone-fold
SuperFamily	SSF47113	1.71E-35	56	159	IPR009072	Histone-fold
Pfam	PF00808	3.2E-26	60	123	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.2E-15	87	105	No hit	No description
PRINTS	PR00615	4.2E-15	106	124	No hit	No description
PRINTS	PR00615	4.2E-15	125	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MPEGPRRNVS VFDEFRFFSS LKMDSNTDGQ PYLRGHDCNV TIDKAGATSY ECINGQNHLL 60 PIANVGRIMK QALPNNARIS KPAKETMQEC ASEFISFVTE EATEQCRKEK RKTINGDDIC 120 SAMKTLGLDE YADAMKRYLC RYREHEEKAT SMKRNKPAQI NVRNELPVFR SNQYRDRSPS 180 KSPCNVAKEK KFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	1e-37	56	144	4	92	Transcription factor HapC (Eurofung)
4g92_B	1e-37	56	144	4	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008796244.1	1e-144	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A2H3YBN7	1e-143	A0A2H3YBN7_PHODC; nuclear transcription factor Y subunit B-3-like
STRING	XP_008796244.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-43	nuclear factor Y, subunit B5