PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1021321g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 427aa    MW: 46416.3 Da    PI: 5.2365
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1021321g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.63e-2028735453128
                 NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++ + wyfF++r+        +nr t++gyWk  g +++++ +++++vglkktL+fy g+ ++g kt+W+mhey+l
  PDK_30s1021321g002 287 QGGNYWYFFTHRA--------QNRETANGYWKPIGVEEAITGSDHNDVGLKKTLIFYVGEPSEGMKTNWIMHEYHL 354
                         467899***9985........58999************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd099921.78E-11816283No hitNo description
Gene3DG3DSA:3.40.800.206.5E-8218283IPR023801Histone deacetylase domain
SuperFamilySSF527686.23E-8118283No hitNo description
PfamPF008508.0E-7119283IPR023801Histone deacetylase domain
PRINTSPR012706.4E-14113136IPR000286Histone deacetylase superfamily
PRINTSPR012706.4E-14147162IPR000286Histone deacetylase superfamily
PRINTSPR012706.4E-14231241IPR000286Histone deacetylase superfamily
PROSITE profilePS5100524.602236393IPR003441NAC domain
PfamPF023656.8E-14280354IPR003441NAC domain
SuperFamilySSF1019412.09E-25281392IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090042Biological Processtubulin deacetylation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0042903Molecular Functiontubulin deacetylase activity
GO:0043014Molecular Functionalpha-tubulin binding
GO:0043621Molecular Functionprotein self-association
GO:0048487Molecular Functionbeta-tubulin binding
GO:0051721Molecular Functionprotein phosphatase 2A binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAAWLLELRT MSSPVLAEVF EAQNFKPASL DDIATVHARA YVAGLEKTLS SVMCFANYEV  60
GATFFALSSI HEAGHTFQES LMAAGAGITL VDSVVAASRL RPDPPVGFAL IRPPGHHAIP  120
EGPMGFCVFG NIAVAARYAQ RAHGLKRVLI IDFDVHHGNG TCDAFYDDPD IFFISTHQNG  180
SYPGTGKIEQ VGQGSGEGTT LNLPLPGGSG DNSMRSVFDE VIVPCAQRFK PEIILVSAGY  240
DAHALDPLAG LQFTTGTYYM LASNIKQLAK ELCGGRCVFF LEGKALQGGN YWYFFTHRAQ  300
NRETANGYWK PIGVEEAITG SDHNDVGLKK TLIFYVGEPS EGMKTNWIMH EYHLFDGVLD  360
NASSSGGSSR SLKKRSSPRT ESNKWVICRV YESSCSSQGF HDDGMELSCL DEVFLSLDDL  420
DEVSLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g0x_A2e-4676283107310HDAH
5g0x_C2e-4676283107310HDAH
5g0y_A2e-4676283107310HDAH
5g0y_B2e-4676283107310HDAH
5g10_A2e-4676283107310HDAH
5g10_B2e-4676283107310HDAH
5g11_A2e-4676283107310HDAH
5g11_B2e-4676283107310HDAH
5g12_A2e-4676283107310HDAH
5g12_B2e-4676283107310HDAH
5li3_A2e-4676283108311Acetoin utilization protein
5li3_B2e-4676283108311Acetoin utilization protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtResponsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). {ECO:0000250, ECO:0000269|PubMed:16176989}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808492.11e-170histone deacetylase 14
SwissprotQ941D61e-135HDA14_ARATH; Histone deacetylase 14
TrEMBLA0A2H3Z5121e-169A0A2H3Z512_PHODC; histone deacetylase 14
STRINGXP_008808492.11e-170(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-39xylem NAC domain 1
Publications ? help Back to Top
  1. Alinsug MV, et al.
    Subcellular localization of class II HDAs in Arabidopsis thaliana: nucleocytoplasmic shuttling of HDA15 is driven by light.
    PLoS ONE, 2012. 7(2): p. e30846
    [PMID:22363501]
  2. Tran HT, et al.
    Arabidopsis thaliana histone deacetylase 14 (HDA14) is an α-tubulin deacetylase that associates with PP2A and enriches in the microtubule fraction with the putative histone acetyltransferase ELP3.
    Plant J., 2012. 71(2): p. 263-72
    [PMID:22404109]
  3. Hartl M, et al.
    Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis.
    Mol. Syst. Biol., 2017. 13(10): p. 949
    [PMID:29061669]
  4. Lee K,Lee HY,Back K
    Rice histone deacetylase 10 and Arabidopsis histone deacetylase 14 genes encode N-acetylserotonin deacetylase, which catalyzes conversion of N-acetylserotonin into serotonin, a reverse reaction for melatonin biosynthesis in plants.
    J. Pineal Res., 2018.
    [PMID:29247559]