PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1024561g013
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 403aa    MW: 45756.1 Da    PI: 6.5788
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1024561g013genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-056387123
                        EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                        y+C+   Cgk F ++s LkrH  tH
  PDK_30s1024561g013 63 YVCHyeGCGKKFLDSSKLKRHFLTH 87
                        9********************9998 PP
2zf-C2H221.46.8e-0793117123
                         EEET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                         + Cp   Cgk Fs   nL+ H+rtH
  PDK_30s1024561g013  93 FICPyeGCGKAFSLDFNLRAHMRTH 117
                         78**********************9 PP
3zf-C2H215.93.6e-05262287123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                         y Cp   Cgk + + + L+ H+r+ H
  PDK_30s1024561g013 262 YACPyeGCGKAYIHEYKLNLHLRReH 287
                         89*********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-122960IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.85E-62974No hitNo description
SMARTSM003550.0123458IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4293463IPR007087Zinc finger, C2H2
PROSITE patternPS0002803658IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-146183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.8796392IPR007087Zinc finger, C2H2
SMARTSM003550.00286387IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806587IPR007087Zinc finger, C2H2
SuperFamilySSF576671.69E-1474127No hitNo description
Gene3DG3DSA:3.30.160.607.4E-2084120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.52893122IPR007087Zinc finger, C2H2
SMARTSM003553.6E-493117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-6121147IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.868123147IPR007087Zinc finger, C2H2
SMARTSM003550.11123147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-9257285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.48E-6257285No hitNo description
SMARTSM003550.0029262287IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011262292IPR007087Zinc finger, C2H2
PROSITE patternPS000280264287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAARTEDMLK TLREKSKEPQ AEEPKTEPTT EVLFLCSYEG CGKTFVDVGV LRKHAHIHGE  60
RQYVCHYEGC GKKFLDSSKL KRHFLTHTGE RDFICPYEGC GKAFSLDFNL RAHMRTHSLE  120
NYHICPYPEC GKKYTHECKL RSHIKAHHEK YLIICHMMCN DGSGKSTEDG SSKYRILAKI  180
IERRFSADWP SFIMFEDDSF TIGSFLCRSL IIEHLGIDLC AQFTSQNSVI DGMKHAPAAE  240
KLHSTPKTPA AAYGSASSER PYACPYEGCG KAYIHEYKLN LHLRREHPGH NSEENGKPAP  300
AADHAMDEAS DQDAYIVKGG VGKNNKRSSK ANQEQKMPPA KMQNRKGSNS ASINVSTVKK  360
QWPRKEVYEE DSEETEEDRD NVEEDGWRYQ GTNGDDEETE DED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-34271472118PROTEIN (YY1 ZINC FINGER DOMAIN)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807673.11e-146zinc finger transcription factor YY1-like isoform X1
TrEMBLA0A2H3Z3471e-145A0A2H3Z347_PHODC; zinc finger transcription factor YY1-like isoform X1
STRINGXP_008807673.11e-145(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.15e-69C2H2 family protein