PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1027561g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 463aa MW: 51172.4 Da PI: 5.1004

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1027561g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	110.9	9e-35	26	117	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d +++ ++sw +nsfvv+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ PDK_30s1027561g002 26 FLSKTYDMVDDLSTDAIVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 107 9*******************99*************************************999.........********** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k PDK_30s1027561g002 108 LLKTINRRKP 117 *****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.9E-38	20	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.35E-34	21	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.9E-62	22	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	8.7E-31	26	115	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-19	26	49	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-19	64	76	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	65	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.7E-19	77	89	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MDADGGGEGT AAGANAGLGG NAPPPFLSKT YDMVDDLSTD AIVSWGPGNN SFVVWNTPEF 60 ARDLLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK TINRRKPVQT 120 HRQAQQSQAQ DTNVAACVEV GKFGLEEEIE MLKRDKNVLM QELVRLRQQQ QATDNQFHTL 180 GQRLQGMEQR QQQMMSFLAK AMQSPEFLAQ LVQQNDNNRR ITGVNRKRQS PTQVNKLDGE 240 STTPDGQIIK YLPLMNEAAK AMLMQILKYD ASPRLESLGN PENFLVENLA SLLQAFDGRS 300 SSSRNSGVTL SKVPTISGTP YLPPSSGFSA ISSSSAPSEI QSSASVAGMV STAELPKMSM 360 LSRAPKAISQ QTDTSISEFS QMEGVVPNDN AVGVSSENHV QPEAECIYMN PISAVMDDQV 420 PIETDNIHEA KEMKPEWENG WDSAENMDHL TERMGFLASL NKT

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MDADGGGEGT AAGANAGLGG NAPPPFLSKT YDMVDDLSTD AIVSWGPGNN SFVVWNTPEF  60
ARDLLPKYFK HSNFSSFVRQ LNTYGFRKVD PDRWEFANEG FLRGQKHLLK TINRRKPVQT  120
HRQAQQSQAQ DTNVAACVEV GKFGLEEEIE MLKRDKNVLM QELVRLRQQQ QATDNQFHTL  180
GQRLQGMEQR QQQMMSFLAK AMQSPEFLAQ LVQQNDNNRR ITGVNRKRQS PTQVNKLDGE  240
STTPDGQIIK YLPLMNEAAK AMLMQILKYD ASPRLESLGN PENFLVENLA SLLQAFDGRS  300
SSSRNSGVTL SKVPTISGTP YLPPSSGFSA ISSSSAPSEI QSSASVAGMV STAELPKMSM  360
LSRAPKAISQ QTDTSISEFS QMEGVVPNDN AVGVSSENHV QPEAECIYMN PISAVMDDQV  420
PIETDNIHEA KEMKPEWENG WDSAENMDHL TERMGFLASL NKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	24	115	18	120	Heat shock factor protein 1
5d5u_B	2e-25	7	115	17	129	Heat shock factor protein 1
5d5v_B	2e-25	7	115	17	129	Heat shock factor protein 1
5d5v_D	2e-25	7	115	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943416.1	0.0	heat stress transcription factor A-1 isoform X1
Swissprot	Q84T61	0.0	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A2H3X3N4	0.0	A0A2H3X3N4_PHODC; heat stress transcription factor A-1-like
STRING	XP_008802552.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-113	heat shock transcription factor A1D

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]