PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1028591g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family MYB_related
Protein Properties Length: 140aa    MW: 15290.9 Da    PI: 4.8302
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1028591g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-123779246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                        g+WT  E +ll++av ++G + W++Ia+++  ++ + +c+ r+ +
  PDK_30s1028591g001 37 GAWTDAETLLLLEAVLKHGDD-WDLIAQHVR-TKNRLDCIARLIQ 79
                        89*****************88.*********.999999*999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-113491IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-83476IPR009057Homeodomain-like
PROSITE profilePS5129318.6733485IPR017884SANT domain
SMARTSM007176.2E-93583IPR001005SANT/Myb domain
PfamPF002495.8E-123679IPR001005SANT/Myb domain
CDDcd001671.93E-93876No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
GGFVVCLKCS KTENEIEGKS ADDNSDRVDG NANHATGAWT DAETLLLLEA VLKHGDDWDL  60
IAQHVRTKNR LDCIARLIQL PFGDHMLGTF SGKYDAKNSG NQATNTKAIQ HASSELLPEP  120
KTDGHVHNDV NEKVEEESIP
Functional Description ? help Back to Top
Source Description
UniProtComponent of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796581.13e-97SWI/SNF complex subunit SWI3A
SwissprotQ8W4752e-19SWI3A_ARATH; SWI/SNF complex subunit SWI3A
TrEMBLA0A2H3YC797e-96A0A2H3YC79_PHODC; SWI/SNF complex subunit SWI3A
STRINGXP_008796581.11e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP289434
Publications ? help Back to Top
  1. Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
    AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
    Nucleic Acids Res., 2002. 30(15): p. 3412-21
    [PMID:12140326]
  2. Zhou C,Miki B,Wu K
    CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
    Plant Mol. Biol., 2003. 52(6): p. 1125-34
    [PMID:14682613]
  3. Sarnowski TJ, et al.
    SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
    Plant Cell, 2005. 17(9): p. 2454-72
    [PMID:16055636]