PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1029841g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

FAR1

Protein Properties

Length: 924aa MW: 105487 Da PI: 6.3986

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1029841g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.1	2.2e-26	32	117	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA +vGFsvrksk+ ++++ + rtfvCsk+g+r+++k + +++r+ trtgC a++++k + +g+++vt+++ +HnH la PDK_30s1029841g001 32 FYNTYAARVGFSVRKSKMWTTSK-DVLAARTFVCSKQGFRQKKKGF--EPKKPRPATRTGCPACMTIKITPSGRYRVTEFVPDHNHLLA 117 9*****************955.559***********9988..999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-23	32	117	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.3E-28	213	306	IPR018289	MULE transposase domain
Pfam	PF04434	3.5E-6	480	525	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.188	480	527	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.9E-4	502	529	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MGAAGDADVP PNPGWVPHLD MQFDSEDAAY AFYNTYAARV GFSVRKSKMW TTSKDVLAAR 60 TFVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS GRYRVTEFVP DHNHLLANPS 120 AAHLLRSHRS KVKARIADDS GMPPDASGDH LLKRRKAMQV GDAGAVLEYL QRTQVENPSF 180 FYAIRVDGDD NMTSFFWADA KSMMDYQYFG DAVCFDTTYK ANDCGRPFAL FVGVNNHKQT 240 IIFGSALLYD ESVESFRWLF DTFKNAMHDK QPKTVLTDKC MEIADALVAA WPGTAHRICA 300 WHVYQNAMKH LNQVFEGSKT FAHDFGQCIF DYEEEEEFVY AWRAMVDKYD LNDNEWLAKL 360 YEDRLMWALP YGKQVFCADI GNNLQKENLV SLLKKHLSPQ HDLLPFFEHY DTLLNERRCL 420 ELQADVHASQ NFLKAPSLRM LKQAANVYTP AVFKAFQNEF EMYMDCMVYH CGDVGAVSDY 480 KVIVDEKSIE HFVRYDSSDN SIFCSCKKFE FAGIQCRHVF KVLDYRNIKE LPPRYILKRW 540 RKDAKLAAVR DRHEYPSADS SKSLVANRYN YLCCIFSTVA ARAAKTVEAF TFIESQSELL 600 LEQVEHILQT RTFEIPQLTI ASIIQPRNLI DSVVESLNHD NNADTNVIIS ATNDHENFPN 660 DCSLTRYKDN TDEDYSDRED FEDPTIGIGL LNQSMHIATR KDPGSMSVLN DHADTVALLG 720 TKAEIHKRTE QAVNASSFIL EITFLNELKS STFLDILKSS SSVSIPETIR HFVSMLLNQV 780 PLDLWFRCGL MKILFESVFC SLKFSELERW CDNNPFPNYG SLRDDRQPSI FEKGDVSSIQ 840 ICIAVQNMHI RGSRLAETMV WFLSGRLLTT GSQWLWPLPT ERILTTHQEL HPGSSKTLIS 900 LENVDCYTSN CCVWSLDQQI PPPS

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MGAAGDADVP PNPGWVPHLD MQFDSEDAAY AFYNTYAARV GFSVRKSKMW TTSKDVLAAR  60
TFVCSKQGFR QKKKGFEPKK PRPATRTGCP ACMTIKITPS GRYRVTEFVP DHNHLLANPS  120
AAHLLRSHRS KVKARIADDS GMPPDASGDH LLKRRKAMQV GDAGAVLEYL QRTQVENPSF  180
FYAIRVDGDD NMTSFFWADA KSMMDYQYFG DAVCFDTTYK ANDCGRPFAL FVGVNNHKQT  240
IIFGSALLYD ESVESFRWLF DTFKNAMHDK QPKTVLTDKC MEIADALVAA WPGTAHRICA  300
WHVYQNAMKH LNQVFEGSKT FAHDFGQCIF DYEEEEEFVY AWRAMVDKYD LNDNEWLAKL  360
YEDRLMWALP YGKQVFCADI GNNLQKENLV SLLKKHLSPQ HDLLPFFEHY DTLLNERRCL  420
ELQADVHASQ NFLKAPSLRM LKQAANVYTP AVFKAFQNEF EMYMDCMVYH CGDVGAVSDY  480
KVIVDEKSIE HFVRYDSSDN SIFCSCKKFE FAGIQCRHVF KVLDYRNIKE LPPRYILKRW  540
RKDAKLAAVR DRHEYPSADS SKSLVANRYN YLCCIFSTVA ARAAKTVEAF TFIESQSELL  600
LEQVEHILQT RTFEIPQLTI ASIIQPRNLI DSVVESLNHD NNADTNVIIS ATNDHENFPN  660
DCSLTRYKDN TDEDYSDRED FEDPTIGIGL LNQSMHIATR KDPGSMSVLN DHADTVALLG  720
TKAEIHKRTE QAVNASSFIL EITFLNELKS STFLDILKSS SSVSIPETIR HFVSMLLNQV  780
PLDLWFRCGL MKILFESVFC SLKFSELERW CDNNPFPNYG SLRDDRQPSI FEKGDVSSIQ  840
ICIAVQNMHI RGSRLAETMV WFLSGRLLTT GSQWLWPLPT ERILTTHQEL HPGSSKTLIS  900
LENVDCYTSN CCVWSLDQQI PPPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026664964.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_026664965.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2H3ZXM6	0.0	A0A2H3ZXM6_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_008805974.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-117	FAR1-related sequence 5