PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1030181g010

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 683aa MW: 74733.5 Da PI: 8.8177

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1030181g010	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.2	4.6e-06	433	476	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + r RR++i ++ +eL +l+P + K++ ae+ + A +Y+k Lq PDK_30s1030181g010 433 VAARERRKKISEKTQELGKLIPGgN------KMNTAEMFQAASKYVKFLQ 476 5679****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.947	426	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-10	427	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.72E-7	429	479	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-10	430	479	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-8	432	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005886	Cellular Component	plasma membrane
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MAAHTLRVWI RPAKSETNKA KRDSDTVSDS LKIKPPECLI GFTRLQKTAN VQKQRSTLTC 60 TTSAPDPVNH SGRVAFKNDL ERTEGWRREE KELRVASKGT EEEHGNGYIH TCRRSINKCK 120 ANTEETEQKQ APRGNRTEKI SSFYYSNGSP LRLCTGAGVG GGGAEQGLEV GEAHLVLVLG 180 GAVGSTGVGP RPGGGVLVGA SSSAQDAVLH PDDAVNPGKH GVLCSPPASK VESSRERRRR 240 RRRRRSRGKA MTVRLYCHFM ALSFHSNWES LDHPGPEMAP FHEHQSEVAD ALLGFFCDPL 300 EASCLPIDSL FDPPDDQFYA ETDPYSLTSF NHPSLSAPSL LSIPPDDHCA PRNELDLYQC 360 PKRPRSCSDL YHPSDLMLEA KSYNGAAAAA PTMARFQAPR FLSEFAVPPP AVGLLVCNAE 420 RKTNGGCLSA QSVAARERRK KISEKTQELG KLIPGGNKMN TAEMFQAASK YVKFLQAQVG 480 ILGLLSTIQP GLVVVQRPKG WKASSQVEQQ LQVLLGSTTI QEKLYGEGKC MVPKELVEAM 540 AQDHEIKSNQ LISRDLDRCG HCGYALNLSS SNRNTTNIGL KYGKAIKKGV VSFFSIDESR 600 FSQTDELRCL PYFNSKNSWG LFRHRTRLLC RKCGSYIGSA YEENSPPIGS ENSDSSSANG 660 ASACKKYSIK ISALQPWSDD SAL

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MAAHTLRVWI RPAKSETNKA KRDSDTVSDS LKIKPPECLI GFTRLQKTAN VQKQRSTLTC  60
TTSAPDPVNH SGRVAFKNDL ERTEGWRREE KELRVASKGT EEEHGNGYIH TCRRSINKCK  120
ANTEETEQKQ APRGNRTEKI SSFYYSNGSP LRLCTGAGVG GGGAEQGLEV GEAHLVLVLG  180
GAVGSTGVGP RPGGGVLVGA SSSAQDAVLH PDDAVNPGKH GVLCSPPASK VESSRERRRR  240
RRRRRSRGKA MTVRLYCHFM ALSFHSNWES LDHPGPEMAP FHEHQSEVAD ALLGFFCDPL  300
EASCLPIDSL FDPPDDQFYA ETDPYSLTSF NHPSLSAPSL LSIPPDDHCA PRNELDLYQC  360
PKRPRSCSDL YHPSDLMLEA KSYNGAAAAA PTMARFQAPR FLSEFAVPPP AVGLLVCNAE  420
RKTNGGCLSA QSVAARERRK KISEKTQELG KLIPGGNKMN TAEMFQAASK YVKFLQAQVG  480
ILGLLSTIQP GLVVVQRPKG WKASSQVEQQ LQVLLGSTTI QEKLYGEGKC MVPKELVEAM  540
AQDHEIKSNQ LISRDLDRCG HCGYALNLSS SNRNTTNIGL KYGKAIKKGV VSFFSIDESR  600
FSQTDELRCL PYFNSKNSWG LFRHRTRLLC RKCGSYIGSA YEENSPPIGS ENSDSSSANG  660
ASACKKYSIK ISALQPWSDD SAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	244	RRRRRRRRR
2	236	248	RRRRRRRRRSRGK
3	237	244	RRRRRRRR
4	238	244	RRRRRRR
5	239	246	RRRRRRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30670.1	9e-31	bHLH family protein