PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1030201g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family TALE
Protein Properties Length: 671aa    MW: 73821.3 Da    PI: 6.6006
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1030201g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.3e-094324691954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  PDK_30s1030201g002 432 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 469
                         554459******************************88 PP
2BELL1161.9e-37295366172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erq+lq+k  kLl +l+eVd+r+kqy++q+q+v+ssF++vag+g+akpYt+lAl +iSr+FrcL+dai+ qi
  PDK_30s1030201g002 295 ERQDLQNKMMKLLAMLDEVDRRHKQYYHQMQIVASSFDVVAGCGAAKPYTALALETISRQFRCLRDAISCQI 366
                         799******************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-57216364IPR006563POX domain
PfamPF075261.2E-47222363IPR006563POX domain
PROSITE profilePS5007112.179410473IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.0E-28412484IPR009057Homeodomain-like
CDDcd000861.27E-12413474No hitNo description
SMARTSM003891.3E-9413477IPR001356Homeobox domain
SuperFamilySSF466892.69E-17414480IPR009057Homeodomain-like
PfamPF059201.1E-17430469IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MATFYSSSTN QMDVMPTFYT RDPGHASYPE SSTASNMMYP RYSPSVPYSG KLTGNNQSQQ  60
NCIDPPVPAS MISQDSFTGG ADFASHLGER PYNALRDGRN EVLFMQTVGR SLTGVSDLVP  120
SSVADDPHMG LHTQLGILNG QNLSLQQSNI STAQRQALSL SLGTQIPVPP FQFQPANSDI  180
SILSSHQSNL GDGRAFRDDI CRNKLMHSNA SPYDLSSFTS TIPNSRYLKV AQQLLDEVVN  240
VQKALKQKTG RTQSLDNSVG ATDSRDNDAE SKGDGMSLNP QGSNDQSPTE LSPSERQDLQ  300
NKMMKLLAML DEVDRRHKQY YHQMQIVASS FDVVAGCGAA KPYTALALET ISRQFRCLRD  360
AISCQIRATK KSLGEKDSSN SKGGGISRLK YIDQQLKQQR AMQQLGMVQH NAWRPQRGLP  420
ETSVSVLRAW LFEHFLHPYP KDSEKLMLAR QTGLTRSQIS NWFINARVRL WKPMIEEMYK  480
EEIGETEMDS NSSLENIPKS RDETGSSEER EHSKSPATEG CHTSQLNESS KSNISSMDAG  540
GTAAGFPNEA SADDTFMNLM LKDRQHDGGD CGLLHDAIAR KSDGSGRLVG FQMAKLGRYR  600
NGGVSLTLGL QHCDGCLPVS NGQQSFLGVR GQDVYSAAPP LEADATDYDC INSMDQRHRF  660
GPSPLLHDFV A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17419476158Homeobox protein Meis1
4xrs_B7e-17419476158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794017.10.0BEL1-like homeodomain protein 7 isoform X2
RefseqXP_008794018.10.0BEL1-like homeodomain protein 7 isoform X2
RefseqXP_026661646.10.0BEL1-like homeodomain protein 7 isoform X2
TrEMBLA0A2H3Y6610.0A0A2H3Y661_PHODC; BEL1-like homeodomain protein 7 isoform X2
STRINGXP_008794014.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-121BEL1-like homeodomain 7