PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1034021g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 666aa MW: 72011.7 Da PI: 6.6745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1034021g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	443	488	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq PDK_30s1034021g002 443 HNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKTLQ 488 9**********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-20	436	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.197	438	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.3E-21	442	497	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.82E-17	443	492	No hit	No description
Pfam	PF00010	2.2E-13	443	488	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-16	444	493	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MPLSEYHRLT ARDKPEATQS RGNNCSSDLF SMPDHEFAEL LWENGQVVMQ SHSSGPRKSS 60 FPTSFSPHAT GVEEKDRRDA IGPKASRFYA MDPMVSDFSP SGPSAHIGVN AQDDDMVPWI 120 NDPTEEPLAD DTPQNDYCLE FLNEFMGATL NPHSTCSKPM PSDRSCGLGQ HASKALTESK 180 SSEPRRVRTS QLFQLSQHCQ SSAPSSKSGV IDKGIGDAAK THLQTKNPAG PKPLQLNGSS 240 MLNFSHFSRP AMPAKANLHG ADRPRSNEKV SPPSNSNLVE STLIESMSGF KSATGVGGRS 300 TSGPPKMEVQ SSAQPPQEVI SVEHSESIWQ QDASTKNSTH ILTNNCSKPP DQLASSSVMA 360 SVALRRQETE KAPAAVVASS SVSSANSAGA ASNDPKQREK RKSLEGDESG YQSDDFEDVS 420 VELEKPATGR GISAKRSRAA EIHNLSERRR RDRINEKMRA LQELIPNCNK ADKASMLEEA 480 IEYLKTLQMQ VQIMSMNSGL CRPPMLLPPG MQHMHAPAMA RFLPMGVGMG MGMGFGYGMG 540 MYDMNCSPSC SMIPAPPFHG PQFPWPSIPG PLGLHGMPGS VKHQMFGVPE RGIPSSMPRS 600 SSSGLSVKAN SVPEITTPMT CAIPASEAAP ASISEDQQHQ NIDTLQRSNI DNSQMQNPNQ 660 EVKEPF

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MPLSEYHRLT ARDKPEATQS RGNNCSSDLF SMPDHEFAEL LWENGQVVMQ SHSSGPRKSS  60
FPTSFSPHAT GVEEKDRRDA IGPKASRFYA MDPMVSDFSP SGPSAHIGVN AQDDDMVPWI  120
NDPTEEPLAD DTPQNDYCLE FLNEFMGATL NPHSTCSKPM PSDRSCGLGQ HASKALTESK  180
SSEPRRVRTS QLFQLSQHCQ SSAPSSKSGV IDKGIGDAAK THLQTKNPAG PKPLQLNGSS  240
MLNFSHFSRP AMPAKANLHG ADRPRSNEKV SPPSNSNLVE STLIESMSGF KSATGVGGRS  300
TSGPPKMEVQ SSAQPPQEVI SVEHSESIWQ QDASTKNSTH ILTNNCSKPP DQLASSSVMA  360
SVALRRQETE KAPAAVVASS SVSSANSAGA ASNDPKQREK RKSLEGDESG YQSDDFEDVS  420
VELEKPATGR GISAKRSRAA EIHNLSERRR RDRINEKMRA LQELIPNCNK ADKASMLEEA  480
IEYLKTLQMQ VQIMSMNSGL CRPPMLLPPG MQHMHAPAMA RFLPMGVGMG MGMGFGYGMG  540
MYDMNCSPSC SMIPAPPFHG PQFPWPSIPG PLGLHGMPGS VKHQMFGVPE RGIPSSMPRS  600
SSSGLSVKAN SVPEITTPMT CAIPASEAAP ASISEDQQHQ NIDTLQRSNI DNSQMQNPNQ  660
EVKEPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	446	451	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008777260.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
TrEMBL	A0A2H3X2B9	0.0	A0A2H3X2B9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRING	XP_008777260.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-37	phytochrome interacting factor 3