PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1035821g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HD-ZIP
Protein Properties Length: 229aa    MW: 25826.3 Da    PI: 9.6883
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1035821g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.9e-1986140256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Le+ F+++++++ +e++ LAk+l+L  rqV vWFqNrRa+ k
  PDK_30s1035821g001  86 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTK 140
                         788899***********************************************98 PP
2HD-ZIP_I/II119.12.4e-3886175191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq++lLE++F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l++en+rL+ke +eLr +l
  PDK_30s1035821g001  86 RKKLRLTKEQSALLEDKFKEQSTLNPKEKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEKLKRYCETLSDENRRLQKELNELR-AL 175
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-1880143IPR009057Homeodomain-like
PROSITE profilePS5007117.55682142IPR001356Homeobox domain
SMARTSM003897.7E-1684146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1786140IPR009057Homeodomain-like
CDDcd000867.19E-1686143No hitNo description
PfamPF000462.9E-1686140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
PfamPF021831.4E-8142176IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-20142185IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MISLEPSLTL GLSDDTYGST VAKVDGSKTW MEGSRVARQS SPQSTVSTFY NSHHPSKTKR  60
DNSMKSDETD KVLSRGSDEE EEGNARKKLR LTKEQSALLE DKFKEQSTLN PKEKQALAKQ  120
LNLRPRQVEV WFQNRRARTK LKQTEVDCEK LKRYCETLSD ENRRLQKELN ELRALKLASP  180
LCMQFPAAAL TMCPSCKRIN TASEGSKGGR FVVAPEAHLF NPFTHSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796968.11e-170homeobox-leucine zipper protein HAT22-like
RefseqXP_026662450.11e-170homeobox-leucine zipper protein HAT22-like
SwissprotA2XE763e-69HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL43e-69HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A2H3YCZ81e-168A0A2H3YCZ8_PHODC; homeobox-leucine zipper protein HAT22-like
STRINGXP_008796968.11e-169(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-71HD-ZIP family protein