PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1043141g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 475aa    MW: 52043.1 Da    PI: 8.6778
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1043141g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.6e-054668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C+k F r  nL+ H r H
  PDK_30s1043141g004 46 YICEVCHKGFQRDQNLQLHRRGH 68
                        89*******************88 PP
2zf-C2H213.20.00027122144123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC +C+k++  +s+ k H +++
  PDK_30s1043141g004 122 WKCDKCSKRYAVQSDWKAHAKVC 144
                         58*****************9987 PP
3zf-C2H211.40.00099152170523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsrk+++++H   +
  PDK_30s1043141g004 152 DCGTIFSRKDSFVTHRAFC 170
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077274.5E-7142IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF576676.95E-74568No hitNo description
Gene3DG3DSA:3.30.160.602.4E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0384668IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7414668IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM003555387117IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5110142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.95E-7117142No hitNo description
SMARTSM00355140122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAVTNAFMHG EVERDTYIKQ PKGFESKSHR DYFSKLRKAF YATNRYICEV CHKGFQRDQN  60
LQLHRRGHNL PWKLKQRSGA EAKKRVYICP EESCTHHDPS RALGDLTGIK KHYSRKHGEK  120
KWKCDKCSKR YAVQSDWKAH AKVCGTKEYR CDCGTIFSRK DSFVTHRAFC DALTEENYRI  180
NHGLAAMVGS LHSQAQAVPS LHPSTTDTIT NPSNSDRNSN NPLRSLSLNP SIPGSSDMLF  240
NQSTTRTACL QLSGSGSSSH HMSMGSPFMS ATALLQKAAE MGAKVSDDSI SPILLRGFTG  300
YSAAPRASGS LKQPLSGHGD VSSQCLGSSI EEGSAARNLG LMSATSGGSY VENQSALQAN  360
SKWTTSDYRP PAFSQSGLVG LSLPMRAENQ TSMAVLGGQM QQSTCEEIAG DREVRMTQDF  420
LGLGPLGDAG FGNPSYDESA VALNYSDGQQ PSGHGMYPYH QMSDGLFEHW HRNGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34118181366Zinc finger protein JACKDAW
5b3h_F5e-34118181366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797147.20.0protein indeterminate-domain 2-like
SwissprotQ9SCQ62e-92IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2H3YDT80.0A0A2H3YDT8_PHODC; protein indeterminate-domain 2-like
STRINGXP_008797147.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-92indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]