PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1043421g007

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

WOX

Protein Properties

Length: 213aa MW: 24140.1 Da PI: 6.4008

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1043421g007	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.9	2.7e-21	61	121	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++ +l +++e++V++WFqNrRa+ k+ PDK_30s1043421g007 61 RQRWTPTPMQLQILESIFDQgNGTPSKQKIKEITLELsqhgQISETNVYNWFQNRRARSKR 121 89***************99************************************97 PP
2	Wus_type_Homeobox	103.9	1.1e-33	60	123	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq PDK_30s1043421g007 60 ARQRWTPTPMQLQILESIFDQGNGTPSKQKIKEITLELSQHGQISETNVYNWFQNRRARSKRKQ 123 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.6E-18	56	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.852	57	122	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.27E-19	59	124	IPR009057	Homeodomain-like
SMART	SM00389	3.5E-14	59	126	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-19	61	121	IPR001356	Homeobox domain
CDD	cd00086	6.43E-14	61	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MTDEQMEVLR RQISVYATIC EQLVEMHKAV TAQQDSLAGM RLGSLYCDPL MTPGGHKITA 60 RQRWTPTPMQ LQILESIFDQ GNGTPSKQKI KEITLELSQH GQISETNVYN WFQNRRARSK 120 RKQTAHLPNN SESEIEADDE SPNEKKPKSE KHTHENLPRT DALSIRGTQT NSDVLSVDPE 180 PNLRQGIDHL IGKMEIPGSF SPYRQGESYD LIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008781303.1	1e-154	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	2e-95	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2H3XBN2	1e-152	A0A2H3XBN2_PHODC; WUSCHEL-related homeobox 8-like
STRING	XP_008781303.1	1e-153	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-71	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]