PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1048841g014
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 351aa    MW: 39629.8 Da    PI: 8.9985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1048841g014genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.3e-50161412128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  PDK_30s1048841g014  16 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 105
                         79***************************.89***************8778899************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
  PDK_30s1048841g014 106 RAENHRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 141
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-5615161IPR003441NAC domain
PROSITE profilePS5100555.37215162IPR003441NAC domain
PfamPF023656.5E-2517141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSAGDGKDDH EHDLVMPGFR FHPTEEELIE FYLRRKVEGK RFNVELITFL DLYRYDPWEL  60
PALAAIGEKE WFFYVPRDRK YRNGDRPNRV TTSGYWKATG ADRMIRAENH RSIGLKKTLV  120
FYSGKAPKGI RTSWIMNEYR LPHNEIDRYQ KAEISLCRVY KRAGVDDHCQ SPGVLSSKAS  180
SSRGTGPDKK NSSSHQPPPS FQTFAGNFSS PMMEKAHKMG GGSNAHMSAQ VLHKPTLYGS  240
TASVASLSST TSTEEDGTTI HPKNMNALIP TCPLLTSATS SIVSPTMDEL NRLVGCNQNY  300
MNQQPNQFLP LPPQPQLLPF STLPVPFPTI SDKLWEWNPL HEVGRDYTSF K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-541716219165NO APICAL MERISTEM PROTEIN
1ut4_B4e-541716219165NO APICAL MERISTEM PROTEIN
1ut7_A4e-541716219165NO APICAL MERISTEM PROTEIN
1ut7_B4e-541716219165NO APICAL MERISTEM PROTEIN
4dul_A4e-541716219165NAC domain-containing protein 19
4dul_B4e-541716219165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008788351.10.0NAC domain-containing protein 35-like
TrEMBLA0A2H3XT200.0A0A2H3XT20_PHODC; NAC domain-containing protein 35-like
STRINGXP_008788351.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.11e-106NAC domain containing protein 35