PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1048841g022

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

ZF-HD

Protein Properties

Length: 233aa MW: 25922.9 Da PI: 9.8294

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1048841g022	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.1	3.7e-32	36	91	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhAas+Gg+a+DGCgEfmps geegt +alkC+AC CHRnFHR+e e PDK_30s1048841g022 36 VVRYRECLKNHAASIGGNATDGCGEFMPS-GEEGTLEALKCSACSCHRNFHRKEIEG 91 69************************9.999******************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	37	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.9E-30	37	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.8E-31	38	89	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.137	39	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.2E-29	154	228	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.28E-19	156	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.3E-27	166	222	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MLVLMATASQ MTLPPSTLHQ MAQQPTAHST KKGGAVVRYR ECLKNHAASI GGNATDGCGE 60 FMPSGEEGTL EALKCSACSC HRNFHRKEIE GQCRHHHHHL KETKSVGHKV VLISRAETLG 120 YSNPAAHRLI PSPLPHQMVM PLGALMASES DEMEGTGGAR APPMGKKRRR TRFAPEQKEK 180 MLSFAERIGW RLQRQEESVV EEFCQEIGVK RKVLKVWMHN NKHSLAKQEL PPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	3e-24	166	224	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM436118	1e-38	AM436118.2 Vitis vinifera contig VV78X172274.5, whole genome shotgun sequence.
GenBank	FQ383444	1e-38	FQ383444.1 Vitis vinifera clone SS0ABG1YO05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026660032.1	1e-157	zinc-finger homeodomain protein 4-like
Swissprot	O64722	1e-69	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	A0A3Q0I3C0	1e-156	A0A3Q0I3C0_PHODC; zinc-finger homeodomain protein 4-like
STRING	XP_008788352.1	1e-138	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	6e-72	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]