PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1049951g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family GATA
Protein Properties Length: 121aa    MW: 13265.4 Da    PI: 10.4762
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1049951g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA551.1e-172659134
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                        C +C   kTp+WR gp g+ktLCnaCG++y++ +
  PDK_30s1049951g004 26 CMHCEIQKTPQWRAGPMGPKTLCNACGVRYKSGR 59
                        99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.2E-162070IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.8572056IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-152457IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.33E-152483No hitNo description
CDDcd002021.17E-112572No hitNo description
PfamPF003202.2E-152660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MKQKKKKKCS AGTAAGGDEA PPVRKCMHCE IQKTPQWRAG PMGPKTLCNA CGVRYKSGRL  60
FPEYRPAASP TFVPSLHSNS HRKVVEMRLE ASHRAAAAGL PSPESASKDS CDLLAYIRRR  120
E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008807395.13e-83GATA transcription factor 8
RefseqXP_026665473.13e-83GATA transcription factor 8
SwissprotQ9SV303e-40GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A2H3Z2F88e-82A0A2H3Z2F8_PHODC; GATA transcription factor 8
STRINGXP_008807395.11e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51693451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-42GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]