PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1050941g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 207aa MW: 22676.7 Da PI: 7.7365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1050941g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.8	2.6e-10	67	108	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f L++l+P K++ +++Le+A++Y+k L PDK_30s1050941g001 67 AARQRRHRISDRFRILKSLVPGG-----SKMDTVSMLEEAIHYVKFL 108 569****************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.643	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	64	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-13	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.27E-14	65	112	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-11	65	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	68	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDTSGDQHME LMEACHYKPP IPSPPLPPSS WGKEGEPSYL LQHPRESRRG GRRGSGVKLS 60 TDPQSVAARQ RRHRISDRFR ILKSLVPGGS KMDTVSMLEE AIHYVKFLKA QILFHQAALM 120 LPLDDTPISF PSTVNATPAS GSATPTVGAS GSDFAPSVFP SSYSSRELPP QQILSNSLPP 180 PTPSLPPFPF SCFQGEEEIL HHVSFNY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811690.1	1e-150	transcription factor LAX PANICLE 1
Swissprot	Q9M041	1e-29	BH140_ARATH; Transcription factor bHLH140
TrEMBL	A0A2H3ZCC6	1e-148	A0A2H3ZCC6_PHODC; transcription factor LAX PANICLE 1
STRING	XP_008811690.1	1e-149	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8553	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01310.1	3e-31	APRATAXIN-like

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]