PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1051101g011
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 159aa    MW: 18386.1 Da    PI: 9.7471
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1051101g011genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36e-5391401128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp+GfrFhPtdeelv++yLk k++g+ +++  vi+evd++k+ePwdLp k  +++++ ew+fFs+rd+ky++g+r+nratk+gyWkatg+d
  PDK_30s1051101g011   9 LPRGFRFHPTDEELVNHYLKGKINGRINSEVVVIPEVDVCKCEPWDLPdKsVIRSDDPEWFFFSPRDRKYPSGHRSNRATKAGYWKATGRD 99 
                         799***********************9888788**************96446677888********************************* PP

                 NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +++k  +++ +g+kktLvf++grapkg++t+W++heyr 
  PDK_30s1051101g011 100 RMIKTKppGSTIIGMKKTLVFHRGRAPKGVRTNWIIHEYRT 140
                         *****9999999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-574143IPR003441NAC domain
PROSITE profilePS5100554.3459159IPR003441NAC domain
PfamPF023653.2E-2810139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAVLPLESLP RGFRFHPTDE ELVNHYLKGK INGRINSEVV VIPEVDVCKC EPWDLPDKSV  60
IRSDDPEWFF FSPRDRKYPS GHRSNRATKA GYWKATGRDR MIKTKPPGST IIGMKKTLVF  120
HRGRAPKGVR TNWIIHEYRT TEFEFDSGEQ VSSCFLLFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-44814219147NAC domain-containing protein 19
3swm_B3e-44814219147NAC domain-containing protein 19
3swm_C3e-44814219147NAC domain-containing protein 19
3swm_D3e-44814219147NAC domain-containing protein 19
3swp_A3e-44814219147NAC domain-containing protein 19
3swp_B3e-44814219147NAC domain-containing protein 19
3swp_C3e-44814219147NAC domain-containing protein 19
3swp_D3e-44814219147NAC domain-containing protein 19
3ulx_A2e-44813914139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008808290.11e-107protein NTM1-like 9
SwissprotF4JN359e-71NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A2H3Z5371e-106A0A2H3Z537_PHODC; protein NTM1-like 9
STRINGXP_008808290.11e-106(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-73NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]