PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1052321g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 173aa    MW: 18840.7 Da    PI: 9.0804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1052321g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12345754
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                        e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+L
  PDK_30s1052321g004  3 EAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKEL 45
                        79*********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.272145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-12350No hitNo description
PfamPF000103.3E-10345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-18363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAEAERQRRE KLNHRFYALR SVVPNVSRMD KASLLADAVS YIKELRTKVE ELEAEAKRVK  60
KEIIVDQGVG GAATTTSTTV SSVVSCGGGG LATMELEVKM LGPDALIRVH SENLSHPTAK  120
LMGALRELEV HVHHASVSTV KEVTVQDVVV RVPYALQVND GLRAALLGRM DKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-223631171Transcription factor MYC2
5gnj_B2e-223631171Transcription factor MYC2
5gnj_E2e-223631171Transcription factor MYC2
5gnj_F2e-223631171Transcription factor MYC2
5gnj_G2e-223631171Transcription factor MYC2
5gnj_I2e-223631171Transcription factor MYC2
5gnj_M2e-223631171Transcription factor MYC2
5gnj_N2e-223631171Transcription factor MYC2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2574622e-46KP257462.1 Salvia miltiorrhiza clone 29 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008810069.11e-116transcription factor MYC4-like
TrEMBLA0A2H3Z8G31e-115A0A2H3Z8G3_PHODC; transcription factor MYC4-like
STRINGXP_008810069.11e-116(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-38bHLH family protein