PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1053181g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 589aa    MW: 64856.8 Da    PI: 9.1345
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1053181g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33231287360
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                         DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++vei+Y+geHnh+k
  PDK_30s1053181g004 231 DGYNWRKYGQKQVKGSECPRSYYKCTHPNCPVKKKVERSL-DGQIVEIVYKGEHNHPK 287
                         9***************************************.***************85 PP
2WRKY93.81.2e-29431487359
                         -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         Dg++WrKYGqK+vkg+ +prsYYrCt+++C+v+k ve++++d   +++tYeg+Hnh+
  PDK_30s1053181g004 431 DGFHWRKYGQKVVKGNLYPRSYYRCTTPNCNVRKYVEKASDDSGSFVTTYEGKHNHT 487
                         9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.5E-30226288IPR003657WRKY domain
SMARTSM007748.0E-38229287IPR003657WRKY domain
SuperFamilySSF1182905.62E-26229288IPR003657WRKY domain
PROSITE profilePS5081124.007231288IPR003657WRKY domain
PfamPF031062.1E-26231286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30415489IPR003657WRKY domain
SuperFamilySSF1182904.58E-27422489IPR003657WRKY domain
PROSITE profilePS5081130.584424489IPR003657WRKY domain
SMARTSM007743.1E-34429488IPR003657WRKY domain
PfamPF031061.7E-23431486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MQDAEKIAAA RPVASRPYNS NLRSFSELLA DAMNASPATS FAEATVAIRP KTLRFKPPPN  60
AAPAEVSSLD NISESDAFNL SDKSSTKISK ADYKTRVLCK PAARVVSRTT ASRLANLKYC  120
ADQLVRMNTI IGRDFRLFYK QFTLKYLVHR HPGNFDASHK KTAIGVQAPV HVLEQEKHQF  180
QYKPTLNCQQ NSSPPMAKNQ FYEPSNSVPP NTQQDPRTQQ PAAGGDRPSF DGYNWRKYGQ  240
KQVKGSECPR SYYKCTHPNC PVKKKVERSL DGQIVEIVYK GEHNHPKPQP PKRLSSGSQG  300
QTVVSEGHGR ESGNPLWKRH LVGGNVSDGQ VENGNEISLP DTTSRLGLAH FSHDLPLATS  360
YNSVAKNPDT IGGLSGASEV GNATASLDND KPNYKRRKNE DQVGGAGTIT EGVAEPHSAT  420
QTSVESDVSG DGFHWRKYGQ KVVKGNLYPR SYYRCTTPNC NVRKYVEKAS DDSGSFVTTY  480
EGKHNHTMPA KKTNLAASDP DAMAICFHML PIGLSILMQT FSVEAWEVDL IQCSTSVTKL  540
EWLLLGQTVS LDEKLSRYSN REVGEAAAAA AEPAQYDFEL YNLVAKLII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28231490678Probable WRKY transcription factor 4
2lex_A4e-28231490678Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3071523e-32DQ307152.1 Cocos nucifera putative WRKY transcription factor 05 gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017695865.10.0WRKY transcription factor 44 isoform X1
TrEMBLA0A2H3ZI950.0A0A2H3ZI95_PHODC; WRKY transcription factor 44 isoform X1
STRINGXP_008776094.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1847669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.22e-75WRKY family protein