PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1055851g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family SBP
Protein Properties Length: 257aa    MW: 28292.6 Da    PI: 8.3589
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1055851g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.4e-41147224178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqv gC adls+ k+yhrrhkvCe+h+ka++++v +  qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  PDK_30s1055851g002 147 TCQVVGCGADLSNSKDYHRRHKVCEMHAKASTAMVGNAIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHP 224
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34140209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.06145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-38146227IPR004333Transcription factor, SBP-box
PfamPF031103.8E-31148221IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEAGIGAESH PFYGSGVSNM NGIGRKNFEW DLNDWKWDGE LFIASPLTAV PSDCRNKQLF  60
PDAANGVLSN SSSSCSDETD FGKGNGEAEK RRRIVVVEED GPYDGAGSLA LKLRGHAYPI  120
PEPDNANCEG KNGKKSKLQG GNSNRPTCQV VGCGADLSNS KDYHRRHKVC EMHAKASTAM  180
VGNAIQRFCQ QCSRFHLLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTSSG TSIIDDQCSS  240
YILMSLLRIL SNLHCNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-32141221484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008813721.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH61e-65SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A2H3ZH430.0A0A2H3ZH43_PHODC; squamosa promoter-binding-like protein 6
STRINGXP_008813721.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.18e-57squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]