PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1057761g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 29094.4 Da PI: 10.4108

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1057761g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	40.1	4.7e-13	11	58	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 i ++ ++t+skR+ gi+ K +E+S+L a++a+i fs+ +l +s PDK_30s1057761g003 11 ITDQASLHITYSKRKSGIISKSYEMSILSKAKIALISFSQAHRLNFFS 58 77888889********************************99998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	5.2E-16	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	18.754	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.68E-16	3	78	No hit	No description
SuperFamily	SSF55455	8.37E-16	3	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-12	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-11	10	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-12	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.9E-12	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MVRRKIPITK ITDQASLHIT YSKRKSGIIS KSYEMSILSK AKIALISFSQ AHRLNFFSGV 60 NRIEDVIEDY VRSPKFLEVY APAQQEALQQ EEERKKAELR KAMDTLKKYF KVMFFVHARI 120 LVDTVGPFRW RKACLLPTYN FLMNNGPSTN QNNMVQNPFW LGGTSQIQPF SFQNHLLESQ 180 ERQLSDLINK ENNLVQRQSR SWLEGPSQIQ NCLPQTQKWQ LPEPLNAQVS NVVNKQTHAY 240 PGGPSTSIPV QR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	4e-16	AGAMOUS-like 104