PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1060091g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 237aa    MW: 26121.9 Da    PI: 6.6754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1060091g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08150191854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  PDK_30s1060091g001 150 AARLRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 191
                         6699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.504142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13143202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14145203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-6151191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-6165196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDVDFCNSSP ETQVDWMNMM IQMEEFAQFS EVPPSTEFPA VPSPEFNNSP TTPTSPIVAG  60
PQPAAMRFVG TTTHHPLIAP IFSSDPTLNT DLWPSSLGDP SLCHQPGSVA AMREMIFRMA  120
AMQPIHIDPE SVKPPKRRNV KISKEPQSVA ARLRRERISE RIRILQRLVP GGTKMDTASM  180
LDEAIHYVKF LKTQVQSLEQ AAASRSMGAV SIQSRSEPFT GCSAGVLQYE PLGLVRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008778297.11e-154transcription factor HEC2-like
SwissprotQ9SND44e-45HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2H3X4Q71e-152A0A2H3X4Q7_PHODC; transcription factor HEC2-like
STRINGXP_008778297.11e-153(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31033682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.16e-43bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]