PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1061641g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 211aa MW: 23211.5 Da PI: 10.5485

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1061641g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.8	1.1e-30	139	205	1	67
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll++l++ +reda++sl+yeAe PDK_30s1061641g001 139 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEAEL 205 7****************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.025	138	211	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-30	139	205	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MTRWMNGVTR TKGGKEISKE LYIFQSDFTI TSKTHTYLPD TLTGSDKIHP IRVESSQPSP 60 TSPLARKSEI KKRGEKEAQP RAEAGPGKRK EKKNSRRIKR IQEKRKEGRV IASHGIVVGP 120 GPGIVSGASS STAASASSPC AACKFLRRKC QPDCVFAPYF PPDQPQKFVH VHRVFGASNV 180 TKLLNELHPY QREDAVNSLA YEAELPISAA G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-37	129	204	1	76	LOB family transfactor Ramosa2.1
5ly0_B	4e-37	129	204	1	76	LOB family transfactor Ramosa2.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200237	3e-76	AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds.
GenBank	AK071407	3e-76	AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence.
GenBank	AK119575	3e-76	AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.
GenBank	AK373607	3e-76	AK373607.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3036G24.
GenBank	AP003431	3e-76	AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBank	AP014957	3e-76	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	3e-76	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	EF540766	3e-76	EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	3e-38	LBD family protein